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Crimean-Congo Hemorrhagic Fever Virus
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PP_000RBRP.4
Version 4
PP_000RBRP.1
Previous version
PP_000RBRP.2
Previous version
PP_000RBRP.3
Previous version
PP_000RBRP.4
Latest version
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Display Name: China/PP_000RBRP.4/2021-04-15
J. Wang,
B. Wang,
X. Xia,
J. Zhou &
Y. Wang
Sample details
Collection date
2021-04-15
Country
China
Isolate name
YNDQ-L415G
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2024-08-27 12:11
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Kunming University of Science and Technology, Faculty of Life Science and Technology
INSDC
INSDC accession L
OQ633002.1
INSDC accession M
OQ633003.1
INSDC accession S
OQ633004.1
NCBI release date
2023-05-30
Host
Host taxon ID
1073286
Host name - scientific
Capricornis milneedwardsii
Alignment and QC metrics L
Length L
11838
Completeness L
97.77%
# of SNPs L
2406
# of inserted bases L
0
# of deleted bases L
0
# of ambiguous bases L
0
# of unknown bases L
0
# of frame shifts L
0
# of stop codons L
0
Alignment and QC metrics M
Length M
5103
Completeness M
94.48%
# of SNPs M
1445
# of inserted bases M
48
# of deleted bases M
15
# of ambiguous bases M
0
# of unknown bases M
0
# of frame shifts M
0
# of stop codons M
0
Alignment and QC metrics S
Length S
1449
Completeness S
86.66%
# of SNPs S
259
# of inserted bases S
0
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
# of stop codons S
0
Submission details
Submission ID
OQ633002.1.L/OQ633003.1.M/OQ633004.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-24 17:35:10 UTC
Date released
2025-09-24 18:29:12 UTC
Earliest release date
2023-05-30
Lineage
Segment S Lineage
unassigned
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
C
82
G
L:
T
86
C
L:
G
88
A
L:
G
93
A
L:
C
95
A
L:
A
109
G
L:
C
117
A
L:
T
121
C
L:
A
124
G
L:
G
130
A
L:
T
131
A
L:
T
139
C
L:
T
151
C
L:
T
154
A
L:
T
157
C
L:
G
172
C
L:
G
175
A
L:
C
199
T
Show more
M
M:
A
80
G
M:
C
81
T
M:
G
84
T
M:
C
85
G
M:
T
86
C
M:
A
87
C
M:
G
95
A
M:
T
98
C
M:
A
101
G
M:
T
102
C
M:
C
103
T
M:
A
104
G
M:
T
105
C
M:
A
107
G
M:
A
108
T
M:
G
110
T
M:
T
111
A
M:
G
114
T
Show more
S
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
C
70
T
S:
G
73
A
S:
T
79
C
S:
A
85
G
S:
A
92
C
S:
C
97
T
S:
T
106
C
S:
A
109
G
S:
A
118
G
S:
A
121
G
S:
T
127
C
S:
A
130
G
S:
C
154
T
S:
T
155
C
S:
T
163
C
Show more
Deletions
M:672-686
Insertions
ins_M:146:GGATCTGTCAGT, ins_M:323:GCAACCACACAGGCCACCGGAGACACA, ins_M:386:CAAGACACA
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
M
1
I
GPC:
I
3
M
GPC:
S
4
L
GPC:
M
6
F
GPC:
Y
7
N
GPC:
A
8
L
GPC:
I
9
A
GPC:
C
11
H
GPC:
L
12
Q
GPC:
Q
13
L
GPC:
C
15
W
GPC:
L
17
G
GPC:
H
21
S
GPC:
G
22
T
GPC:
S
23
N
GPC:
H
24
S
GPC:
E
26
A
GPC:
R
28
Q
Show more
NP
NP:
M
13
L
NP:
Y
34
H
NP:
S
39
N
NP:
S
52
G
NP:
A
100
T
NP:
T
124
A
NP:
G
125
N
NP:
V
141
I
NP:
N
144
S
NP:
A
154
S
NP:
G
185
S
NP:
N
188
S
NP:
H
195
R
NP:
V
198
I
NP:
D
199
E
NP:
V
205
I
NP:
I
220
V
NP:
I
246
V
Show more
RdRp
RdRp:
D
2
E
RdRp:
S
6
N
RdRp:
L
7
I
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
H
56
Y
RdRp:
Y
60
N
RdRp:
I
61
V
RdRp:
S
67
V
RdRp:
Y
72
F
RdRp:
E
75
D
RdRp:
R
80
K
RdRp:
K
91
Q
RdRp:
L
94
T
RdRp:
A
122
T
RdRp:
D
135
E
RdRp:
I
157
M
RdRp:
T
163
V
Show more
Deletions
GPC:189-218
Insertions
ins_GPC:18:GSVS, ins_GPC:111:TKPNATSPNAST, ins_GPC:237:PSRIRATQDQHPITPEAKHPTAIAA
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