Display Name: China/PP_000RBRP.4/2021-04-15
J. Wang, B. Wang, X. Xia, J. Zhou & Y. Wang

Sample details

Collection date
2021-04-15
Country
China
Isolate name
YNDQ-L415G

Data use terms

Data use terms
OPEN

Authors

Author affiliations
Kunming University of Science and Technology, Faculty of Life Science and Technology

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2023-05-30

Host

Host taxon ID
Host name - scientific
Capricornis milneedwardsii

Alignment and QC metrics L

Length L
11838
Completeness L
97.77%
# of SNPs L
2406
# of inserted bases L
0
# of deleted bases L
0
# of ambiguous bases L
0
# of unknown bases L
0
# of frame shifts L
0
# of stop codons L
0

Alignment and QC metrics M

Length M
5103
Completeness M
94.48%
# of SNPs M
1445
# of inserted bases M
48
# of deleted bases M
15
# of ambiguous bases M
0
# of unknown bases M
0
# of frame shifts M
0
# of stop codons M
0

Alignment and QC metrics S

Length S
1449
Completeness S
86.66%
# of SNPs S
259
# of inserted bases S
0
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
# of stop codons S
0

Submission details

Submission ID
OQ633002.1.L/OQ633003.1.M/OQ633004.1.S
Date submitted
2025-09-24 17:35:10 UTC
Date released
2025-09-24 18:29:12 UTC
Earliest release date
2023-05-30

Lineage

Segment S Lineage
unassigned

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:C82G
  • L:T86C
  • L:G88A
  • L:G93A
  • L:C95A
  • L:A109G
  • L:C117A
  • L:T121C
  • L:A124G
  • L:G130A
  • L:T131A
  • L:T139C
  • L:T151C
  • L:T154A
  • L:T157C
  • L:G172C
  • L:G175A
  • L:C199T
  • M

  • M:A80G
  • M:C81T
  • M:G84T
  • M:C85G
  • M:T86C
  • M:A87C
  • M:G95A
  • M:T98C
  • M:A101G
  • M:T102C
  • M:C103T
  • M:A104G
  • M:T105C
  • M:A107G
  • M:A108T
  • M:G110T
  • M:T111A
  • M:G114T
  • S

  • S:A61G
  • S:C64T
  • S:G67A
  • S:C70T
  • S:G73A
  • S:T79C
  • S:A85G
  • S:A92C
  • S:C97T
  • S:T106C
  • S:A109G
  • S:A118G
  • S:A121G
  • S:T127C
  • S:A130G
  • S:C154T
  • S:T155C
  • S:T163C
  • Deletions
    M:672-686
    Insertions
    ins_M:146:GGATCTGTCAGT, ins_M:323:GCAACCACACAGGCCACCGGAGACACA, ins_M:386:CAAGACACA

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:M1I
  • GPC:I3M
  • GPC:S4L
  • GPC:M6F
  • GPC:Y7N
  • GPC:A8L
  • GPC:I9A
  • GPC:C11H
  • GPC:L12Q
  • GPC:Q13L
  • GPC:C15W
  • GPC:L17G
  • GPC:H21S
  • GPC:G22T
  • GPC:S23N
  • GPC:H24S
  • GPC:E26A
  • GPC:R28Q
  • NP

  • NP:M13L
  • NP:Y34H
  • NP:S39N
  • NP:S52G
  • NP:A100T
  • NP:T124A
  • NP:G125N
  • NP:V141I
  • NP:N144S
  • NP:A154S
  • NP:G185S
  • NP:N188S
  • NP:H195R
  • NP:V198I
  • NP:D199E
  • NP:V205I
  • NP:I220V
  • NP:I246V
  • RdRp

  • RdRp:D2E
  • RdRp:S6N
  • RdRp:L7I
  • RdRp:A14D
  • RdRp:S19T
  • RdRp:H56Y
  • RdRp:Y60N
  • RdRp:I61V
  • RdRp:S67V
  • RdRp:Y72F
  • RdRp:E75D
  • RdRp:R80K
  • RdRp:K91Q
  • RdRp:L94T
  • RdRp:A122T
  • RdRp:D135E
  • RdRp:I157M
  • RdRp:T163V
  • Deletions
    GPC:189-218
    Insertions
    ins_GPC:18:GSVS, ins_GPC:111:TKPNATSPNAST, ins_GPC:237:PSRIRATQDQHPITPEAKHPTAIAA

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