Pathoplexus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Ebola Zaire
West Nile Virus
Browse
Submit
SeqSets
News
About
Docs
Login
Loculus
Browse
Submit
SeqSets
News
About
Docs
Login
API docs
Governance
Contact
Status
PP_000RBRP.1
Download FASTA
Display Name: China/PP_000RBRP.1/2021-04-15
B. Wang,
J. Wang,
J. Zhou,
X. Xia,
Y. Wang
Submission details
Submission ID
OQ633002.1.L/OQ633004.1.S
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-08-27 12:10:45 UTC
Date released
2024-08-27 12:16:05 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-08-27 12:11
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Kunming University of Science and Technology, Faculty of Life Science and Technology
Alignment states and QC metrics L
Completeness L
97.77%
Frame shifts L
RdRp:778-779(nt:2406-2413)
Length L
11838
Total ambiguous nucs L
0
Total deleted nucs L
4
Total frame shifts L
1
Total inserted nucs L
4
Total SNPs L
2397
Total unknown nucs L
0
Alignment states and QC metrics S
Completeness S
86.66%
Length S
1449
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
259
Total unknown nucs S
0
Sample details
Collection subdivision level 2
Asia
Collection country
China
Collection date
2021-04-15
Isolate name
YNDQ-L415G
Host
Host name scientific
Capricornis milneedwardsii
Host taxon id
1073286
INSDC
INSDC accession L
OQ633002.1
INSDC accession S
OQ633004.1
NCBI release date
2023-05-30
Nucleotide mutations
Substitutions
L
L:
C
82
G
L:
T
86
C
L:
G
88
A
L:
G
93
A
L:
C
95
A
L:
A
109
G
L:
C
117
A
L:
T
121
C
L:
A
124
G
L:
G
130
A
L:
T
131
A
L:
T
139
C
L:
T
151
C
L:
T
154
A
L:
T
157
C
L:
G
172
C
L:
G
175
A
L:
C
199
T
Show more
S
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
C
70
T
S:
G
73
A
S:
T
79
C
S:
A
85
G
S:
A
92
C
S:
C
97
T
S:
T
106
C
S:
A
109
G
S:
A
118
G
S:
A
121
G
S:
T
127
C
S:
A
130
G
S:
C
154
T
S:
T
155
C
S:
T
163
C
Show more
Deletions
L:2395-2397, L:2405
Insertions
ins_L:2413:CGTT
Amino acid mutations
Substitutions
NP
NP:
M
13
L
NP:
Y
34
H
NP:
S
39
N
NP:
S
52
G
NP:
A
100
T
NP:
T
124
A
NP:
G
125
N
NP:
V
141
I
NP:
N
144
S
NP:
A
154
S
NP:
G
185
S
NP:
N
188
S
NP:
H
195
R
NP:
V
198
I
NP:
D
199
E
NP:
V
205
I
NP:
I
220
V
NP:
I
246
V
Show more
RdRp
RdRp:
D
2
E
RdRp:
S
6
N
RdRp:
L
7
I
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
H
56
Y
RdRp:
Y
60
N
RdRp:
I
61
V
RdRp:
S
67
V
RdRp:
Y
72
F
RdRp:
E
75
D
RdRp:
R
80
K
RdRp:
K
91
Q
RdRp:
L
94
T
RdRp:
A
122
T
RdRp:
D
135
E
RdRp:
I
157
M
RdRp:
T
163
V
Show more
Deletions
RdRp:777
Insertions
None
Load sequences