PP_000RBRP.3

Display Name: China/PP_000RBRP.3/2021-04-15
J. Wang, B. Wang, X. Xia, J. Zhou & Y. Wang

Sample details

Collection date
2021-04-15
Country
China
Isolate name
YNDQ-L415G

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Kunming University of Science and Technology, Faculty of Life Science and Technology

INSDC

INSDC accession L
INSDC accession S
NCBI release date
2023-05-30

Host

Host taxon ID
Host name - scientific
Capricornis milneedwardsii

Alignment and QC metrics L

Length L
11838
Completeness L
97.77%
# of SNPs L
2406
# of inserted bases L
0
# of deleted bases L
0
# of ambiguous bases L
0
# of unknown bases L
0
# of frame shifts L
0
# of stop codons L
0

Alignment and QC metrics S

Length S
1449
Completeness S
86.66%
# of SNPs S
259
# of inserted bases S
0
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
# of stop codons S
0

Submission details

Submission ID
OQ633002.1.L/OQ633004.1.S
Submitting group
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:15:40 UTC
Earliest release date
2023-05-30

Lineage

Segment S Lineage
unassigned

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:C82G
  • L:T86C
  • L:G88A
  • L:G93A
  • L:C95A
  • L:A109G
  • L:C117A
  • L:T121C
  • L:A124G
  • L:G130A
  • L:T131A
  • L:T139C
  • L:T151C
  • L:T154A
  • L:T157C
  • L:G172C
  • L:G175A
  • L:C199T

    • S

  • S:A61G
  • S:C64T
  • S:G67A
  • S:C70T
  • S:G73A
  • S:T79C
  • S:A85G
  • S:A92C
  • S:C97T
  • S:T106C
  • S:A109G
  • S:A118G
  • S:A121G
  • S:T127C
  • S:A130G
  • S:C154T
  • S:T155C
  • S:T163C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:M13L
  • NP:Y34H
  • NP:S39N
  • NP:S52G
  • NP:A100T
  • NP:T124A
  • NP:G125N
  • NP:V141I
  • NP:N144S
  • NP:A154S
  • NP:G185S
  • NP:N188S
  • NP:H195R
  • NP:V198I
  • NP:D199E
  • NP:V205I
  • NP:I220V
  • NP:I246V

    • RdRp

  • RdRp:D2E
  • RdRp:S6N
  • RdRp:L7I
  • RdRp:A14D
  • RdRp:S19T
  • RdRp:H56Y
  • RdRp:Y60N
  • RdRp:I61V
  • RdRp:S67V
  • RdRp:Y72F
  • RdRp:E75D
  • RdRp:R80K
  • RdRp:K91Q
  • RdRp:L94T
  • RdRp:A122T
  • RdRp:D135E
  • RdRp:I157M
  • RdRp:T163V
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue