PP_000RBRP.3

China/PP_000RBRP.3/2021-04-15
J. Wang, B. Wang, X. Xia, J. Zhou & Y. Wang

Kunming University of Science and Technology, Faculty of Life Science and Technology

Sample details

Collection date
2021-04-15
Sampling location
China
Isolate name
YNDQ-L415G

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession L
INSDC accession S
NCBI release date
2023-05-30

Host

Host

Submission details

Submission ID
OQ633002.1.L/OQ633004.1.S
Submitting group
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:15:40 UTC
Earliest release date
2023-05-30

Lineage

Segment S Lineage
unassigned

Alignment and QC

Length L
11838 (97.8%)
# of SNPs L
2406
Length S
1449 (86.7%)
# of SNPs S
259

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • C82G
  • T86C
  • G88A
  • G93A
  • C95A
  • A109G
  • C117A
  • T121C
  • A124G
  • G130A
  • T131A
  • T139C
  • T151C
  • T154A
  • T157C
  • G172C
  • G175A
  • C199T

S

  • A61G
  • C64T
  • G67A
  • C70T
  • G73A
  • T79C
  • A85G
  • A92C
  • C97T
  • T106C
  • A109G
  • A118G
  • A121G
  • T127C
  • A130G
  • C154T
  • T155C
  • T163C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:M13L
  • NP:Y34H
  • NP:S39N
  • NP:S52G
  • NP:A100T
  • NP:T124A
  • NP:G125N
  • NP:V141I
  • NP:N144S
  • NP:A154S
  • NP:G185S
  • NP:N188S
  • NP:H195R
  • NP:V198I
  • NP:D199E
  • NP:V205I
  • NP:I220V
  • NP:I246V

RdRp

  • RdRp:D2E
  • RdRp:S6N
  • RdRp:L7I
  • RdRp:A14D
  • RdRp:S19T
  • RdRp:H56Y
  • RdRp:Y60N
  • RdRp:I61V
  • RdRp:S67V
  • RdRp:Y72F
  • RdRp:E75D
  • RdRp:R80K
  • RdRp:K91Q
  • RdRp:L94T
  • RdRp:A122T
  • RdRp:D135E
  • RdRp:I157M
  • RdRp:T163V
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue