PP_000R750.3

Display Name: Uganda/PP_000R750.3/2021-04-27
L. Nyakarahuka, S. Whitmer, J. Kyondo, S. Mulei, C. M. Cossaboom, C. T. Telford, A. Tumusiime, G. G. Akurut, D. Namanya, K. Kamugisha, J. Baluku, J. Lutwama, S. Balinandi, T. Shoemaker, J. D. Klena & S. L. M. Whitmer

Sample details

Collection date
2021-04-27
Country
Uganda
Admin level 1
Kikuube district
Isolate name
2021000741

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Centers for Disease Control and Prevention, Viral Special Pathogens Branch

INSDC

INSDC accession S
NCBI release date
2022-10-19

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics S

Length S
1568
Completeness S
90.73%
# of SNPs S
251
# of inserted bases S
1
# of deleted bases S
1
# of ambiguous bases S
1
# of unknown bases S
50
# of frame shifts S
0
# of stop codons S
0

Submission details

Submission ID
OL690431.1.S
Submitting group
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:15:40 UTC
Earliest release date
2022-10-19

Lineage

Segment S Lineage
II

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:A50G
  • S:G54A
  • S:A61G
  • S:C64T
  • S:G67A
  • S:A78C
  • S:A81G
  • S:A85G
  • S:A118G
  • S:G122A
  • S:A124C
  • S:A130T
  • S:G136A
  • S:T144A
  • S:C154T
  • S:T157C
  • S:C166T
  • S:T175C
    • Deletions
    S:1516
    Insertions
    ins_S:1581:C

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:N8T
  • NP:N9S
  • NP:G23S
  • NP:F30Y
  • NP:T111A
  • NP:D116G
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:I277V
  • NP:S301G
  • NP:A307P
  • NP:Y311F
  • NP:T320S
  • NP:Q370E
  • NP:V436I
    • Deletions
    None
    Insertions
    None

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