This is not the latest version of this sequence entry.

The latest version is:PP_000R750.4

PP_000R750.3

Uganda/PP_000R750.3/2021-04-27

L. Nyakarahuka, S. Whitmer, J. Kyondo, S. Mulei, C. M. Cossaboom, C. T. Telford, A. Tumusiime, G. G. Akurut, D. Namanya, K. Kamugisha, J. Baluku, J. Lutwama, S. Balinandi, T. Shoemaker, J. D. Klena & S. L. M. Whitmer

The Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date

2021-04-27

Sampling location

Uganda (Kikuube district)

Isolate name

2021000741

Data use terms

Changed	User	Data use terms
2024-08-27 12:11	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

INSDC

INSDC accession S

OL690431.1

NCBI release date

2022-10-19

Host

Homo sapiens

Submission details

Submission ID

OL690431.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2024-10-29 17:10:51 UTC

Date released

2024-10-29 17:15:40 UTC

Earliest release date

2022-10-19

Lineage

Segment S Lineage

Alignment and QC

Length S

1568 (90.7%)

# of SNPs S

251

# of inserted bases S

# of deleted bases S

# of ambiguous bases S

# of unknown bases S

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

A50G
G54A
A61G
C64T
G67A
A78C
A81G
A85G
A118G
G122A
A124C
A130T
G136A
T144A
C154T
T157C
C166T
T175C

Deletions

S

1516

Insertions

S

ins_1581:C

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references