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Status
PP_000R750.2
All versions
PP_000R750.1
(Revised)
PP_000R750.2
(Latest version)
Download FASTA
Display Name: Uganda/PP_000R750.2/2021-04-27
L. Nyakarahuka,
S. Whitmer,
J. Kyondo,
S. Mulei,
C.M. Cossaboom,
C.T. Telford,
A. Tumusiime,
G.G. Akurut,
D. Namanya,
K. Kamugisha,
J. Baluku,
J. Lutwama,
S. Balinandi,
T. Shoemaker,
J.D. Klena,
S.L.M. Whitmer
Submission details
Submission ID
OL690431.1.S
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-26 15:01:57 UTC
Date released
2024-09-26 15:19:14 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-08-27 12:11
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
The Centers for Disease Control and Prevention, Viral Special Pathogens Branch
Alignment states and QC metrics S
Completeness S
92.46%
Length S
1568
Total ambiguous nucs S
1
Total deleted nucs S
29
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
249
Total unknown nucs S
50
Sample details
Collection subdivision level 1
Kikuube district
Collection country
Uganda
Collection date
2021-04-27
Isolate name
2021000741
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession S
OL690431.1
NCBI release date
2022-10-19
Nucleotide mutations
Substitutions
S
S:
A
50
G
S:
G
54
A
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
A
78
C
S:
A
81
G
S:
A
85
G
S:
A
118
G
S:
G
122
A
S:
A
124
C
S:
A
130
T
S:
G
136
A
S:
T
144
A
S:
C
154
T
S:
T
157
C
S:
C
166
T
S:
T
175
C
Show more
Deletions
S:1516, S:1572-1583, S:1613-1628
Insertions
None
Amino acid mutations
Substitutions
NP
NP:
N
8
T
NP:
N
9
S
NP:
G
23
S
NP:
F
30
Y
NP:
T
111
A
NP:
D
116
G
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
I
277
V
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
NP:
T
320
S
NP:
Q
370
E
NP:
V
436
I
Deletions
None
Insertions
None
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