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Crimean-Congo Hemorrhagic Fever Virus
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PP_000R750.4
Version 4
PP_000R750.1
Previous version
PP_000R750.2
Previous version
PP_000R750.3
Previous version
PP_000R750.4
Latest version
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Display Name: Uganda/PP_000R750.4/2021-04-27
L. Nyakarahuka,
S. Whitmer,
J. Kyondo,
S. Mulei,
C. M. Cossaboom,
C. T. Telford,
A. Tumusiime,
G. G. Akurut,
D. Namanya,
K. Kamugisha,
J. Baluku,
J. Lutwama,
S. Balinandi,
T. Shoemaker,
J. D. Klena &
S. L. M. Whitmer
Sample details
Collection date
2021-04-27
Country
Uganda
Admin level 1
Kikuube district
Isolate name
2021000741
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2024-08-27 12:11
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
The Centers for Disease Control and Prevention, Viral Special Pathogens Branch
INSDC
INSDC accession M
OL690430.1
INSDC accession S
OL690431.1
NCBI release date
2022-10-19
Host
Host taxon ID
9606
Host name - scientific
Homo sapiens
Alignment and QC metrics M
Length M
5348
Completeness M
81.20%
# of SNPs M
1289
# of inserted bases M
70
# of deleted bases M
48
# of ambiguous bases M
2
# of unknown bases M
967
# of frame shifts M
0
# of stop codons M
0
Alignment and QC metrics S
Length S
1568
Completeness S
90.73%
# of SNPs S
251
# of inserted bases S
1
# of deleted bases S
1
# of ambiguous bases S
1
# of unknown bases S
50
# of frame shifts S
0
# of stop codons S
0
Submission details
Submission ID
OL690430.1.M/OL690431.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-24 17:35:10 UTC
Date released
2025-09-24 18:29:12 UTC
Earliest release date
2022-10-19
Lineage
Segment S Lineage
II
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
M
M:
G
50
T
M:
A
51
G
M:
A
52
T
M:
T
54
C
M:
G
55
A
M:
G
56
T
M:
A
57
T
M:
T
58
A
M:
T
59
A
M:
A
61
G
M:
T
65
A
M:
A
69
G
M:
A
70
T
M:
T
71
A
M:
T
72
G
M:
G
76
A
M:
T
79
C
M:
A
80
G
Show more
S
S:
A
50
G
S:
G
54
A
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
A
78
C
S:
A
81
G
S:
A
85
G
S:
A
118
G
S:
G
122
A
S:
A
124
C
S:
A
130
T
S:
G
136
A
S:
T
144
A
S:
C
154
T
S:
T
157
C
S:
C
166
T
S:
T
175
C
Show more
Deletions
M:162-164, M:726-740, M:5162-5191, S:1516
Insertions
ins_M:398:CAGGAGACAAAAATACACATGACTCAG, ins_M:443:ACCATATCGGTTAAA, ins_M:471:TTCCACAAG, ins_M:5290:TAGCTTATGATAGTTGATC, ins_S:1581:C
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
M
1
R
GPC:
H
2
L
GPC:
I
3
V
GPC:
S
4
L
GPC:
M
6
I
GPC:
Y
7
S
GPC:
A
8
L
GPC:
I
9
A
GPC:
L
10
F
GPC:
L
12
Q
GPC:
Q
13
L
GPC:
C
15
E
GPC:
K
31
D
GPC:
T
32
G
GPC:
D
33
I
GPC:
M
35
S
GPC:
T
36
A
GPC:
T
37
N
Show more
NP
NP:
N
8
T
NP:
N
9
S
NP:
G
23
S
NP:
F
30
Y
NP:
T
111
A
NP:
D
116
G
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
I
277
V
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
NP:
T
320
S
NP:
Q
370
E
NP:
V
436
I
Deletions
GPC:17-29, GPC:190-194
Insertions
ins_GPC:131:DTTTSNITISVKPVTTPPTSQIPQATPTP
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