Ethiopia/PX890985/2025-11-19
Niazy Maysa, Wolday Dawit, Zerihun Betselot, Bashea Chala & Getu Melak

Department of Biochemistry and Biomedical Sciences, Michael G. DeGroote Institute for Infectious Diseases Research, Health Sciences, Hamilton, Ontario, Canada, Ethiopian Public Health Institute, Addis Ababa, Ethiopia

Sample details

Collection date
2025-11-19
Sampling location
Ethiopia (Jinka, Ari Zone)

Data use terms

Data use terms
RESTRICTED

Clade

Clade
MARV.A.1

Submission details

Submission ID
PX890985
Submitting group
Date submitted
2026-07-21 16:38:34 UTC
Date released
2026-07-21 16:39:14 UTC
Earliest release date
2026-06-17

Alignment and QC

Length
19095 (99.3%)
# of SNPs
1117
# of ambiguous bases
1
# of unknown bases
122

Nucleotide mutations

Mutations called relative to the NC_001608.3 reference

Substitutions
  • G101A
  • C115T
  • T118C
  • G124A
  • T157C
  • A169G
  • G214A
  • C256T
  • A262G
  • G289A
  • T304C
  • G310A
  • G337A
  • G340A
  • A346G
  • A364G
  • C433T
  • C443T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001608.3 reference

Substitutions

GP

  • GP:F6L
  • GP:L7F
  • GP:T16I
  • GP:N18T
  • GP:K158R
  • GP:S201N
  • GP:Q205K
  • GP:K222N
  • GP:P233S
  • GP:L244P
  • GP:D250N
  • GP:K253T
  • GP:S260N
  • GP:A267I
  • GP:R276Q
  • GP:P278S
  • GP:A284T
  • GP:S291P

L

  • L:A115V
  • L:S128P
  • L:V189I
  • L:I214V
  • L:H335C
  • L:D336S
  • L:L341F
  • L:D345G
  • L:T399V
  • L:E536D
  • L:N761D
  • L:N887S
  • L:S957A
  • L:K981R
  • L:E1143K
  • L:D1162E
  • L:K1164E
  • L:E1180G

NP

  • NP:V334I
  • NP:R407Q
  • NP:M428I
  • NP:D440N
  • NP:G481S
  • NP:A577V
  • NP:N578S
  • NP:P579S
  • NP:M612A
  • NP:D625Y
  • NP:N654S

VP24

  • VP24:N17K
  • VP24:K237R

VP30

  • VP30:V15A
  • VP30:P17S
  • VP30:T18S
  • VP30:Y34H
  • VP30:S63P
  • VP30:A88T
  • VP30:P125L
  • VP30:S159N
  • VP30:M201I
  • VP30:G278S

VP35

  • VP35:I62V
  • VP35:R70K
  • VP35:S91N
  • VP35:A184E
  • VP35:S193A

VP40

  • VP40:V57I
  • VP40:V303I
Deletions
N/A
Insertions
N/A

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