Ethiopia/PP_00730R4.1/2025-11-19
Niazy Maysa & Wolday Dawit

Department of Biochemistry and Biomedical Sciences, Michael G. DeGroote Institute for Infectious Diseases Research, Health Sciences, Hamilton, Ontario, Canada.

Sample details

Collection date
2025-11-19
Sampling location
Ethiopia (Jinka, Ari Zone)

Data use terms

Data use terms
RESTRICTED

Data use terms history

ChangedUserData use terms
2026-06-11 15:37niazym@mcmaster.caRESTRICTED until 2027-06-11

Clade

Clade
MARV.A.1

Submission details

Submission ID
PX890985
Submitting group
Date submitted
2026-06-11 15:37:12 UTC
Date released
2026-06-17 17:19:26 UTC
Earliest release date
2026-06-17

Alignment and QC

Length
19095 (99.3%)
# of SNPs
1117
# of ambiguous bases
1
# of unknown bases
122

Nucleotide mutations

Mutations called relative to the NC_001608.3 reference

Substitutions

  • G101A
  • C115T
  • T118C
  • G124A
  • T157C
  • A169G
  • G214A
  • C256T
  • A262G
  • G289A
  • T304C
  • G310A
  • G337A
  • G340A
  • A346G
  • A364G
  • C433T
  • C443T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001608.3 reference

Substitutions

GP

  • GP:F6L
  • GP:L7F
  • GP:T16I
  • GP:N18T
  • GP:K158R
  • GP:S201N
  • GP:Q205K
  • GP:K222N
  • GP:P233S
  • GP:L244P
  • GP:D250N
  • GP:K253T
  • GP:S260N
  • GP:A267I
  • GP:R276Q
  • GP:P278S
  • GP:A284T
  • GP:S291P

L

  • L:A115V
  • L:S128P
  • L:V189I
  • L:I214V
  • L:H335C
  • L:D336S
  • L:L341F
  • L:D345G
  • L:T399V
  • L:E536D
  • L:N761D
  • L:N887S
  • L:S957A
  • L:K981R
  • L:E1143K
  • L:D1162E
  • L:K1164E
  • L:E1180G

NP

  • NP:V334I
  • NP:R407Q
  • NP:M428I
  • NP:D440N
  • NP:G481S
  • NP:A577V
  • NP:N578S
  • NP:P579S
  • NP:M612A
  • NP:D625Y
  • NP:N654S

VP24

  • VP24:N17K
  • VP24:K237R

VP30

  • VP30:V15A
  • VP30:P17S
  • VP30:T18S
  • VP30:Y34H
  • VP30:S63P
  • VP30:A88T
  • VP30:P125L
  • VP30:S159N
  • VP30:M201I
  • VP30:G278S

VP35

  • VP35:I62V
  • VP35:R70K
  • VP35:S91N
  • VP35:A184E
  • VP35:S193A

VP40

  • VP40:V57I
  • VP40:V303I
Deletions
N/A
Insertions
N/A

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