PP_006W0BD.2

Version 2

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Argentina/PP_006W0BD.2/2017-05-11

D. O. Alonso, U. Perez-Sautu, C. M. Bellomo, K. Prieto, A. Iglesias, R. Coelho, N. Periolo, I. Domenech, G. Talmon, R. Hansen, G. Palacios & V. P. Martinez

INEI - ANLIS Dr C G Malbran, Virologia

Sample details

Collection date

2017-05-11

Sampling location

Argentina (Chubut)

Isolate name

ARLA17/NRC2

Data use terms

Changed	User	Data use terms
2026-05-09 17:55	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

INSDC

INSDC accession L

MN850097.1

INSDC accession M

MN850092.1

INSDC accession S

MN850087.1

NCBI release date

2020-03-31

Host

human (Homo sapiens)

Host age

Host age bin

30 - 39

Host gender

Female

Host origin country

Argentina

Host disease

Hantavirus Pulmonary Syndrome

Host health outcome

Survived

Host role

Exposed Patient

Exposure setting

camping activities

Sequencing

Sequencing instrument

illumina

Sequencing protocol

For whole-genome sequencing, we extracted RNA from peripheral blood of patients and prepared sequencing libraries by using target-enrichment technology and ANDV-specific probes.

Submission details

Submission ID

MN850097.1.L/MN850092.1.M/MN850087.1.S

Version comment

https://github.com/artic-network/artic-andv/blob/main/andv-metadata.csv

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-05-25 05:26:34 UTC

Date released

2026-06-25 14:23:19 UTC

Earliest release date

2020-03-31

Alignment and QC

Length L

6532 (99.5%)

# of SNPs L

385

Length M

3646 (99.1%)

# of SNPs M

205

# of inserted bases M

Length S

1844 (98.5%)

# of SNPs S

118

# of inserted bases S

# of deleted bases S

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

T47C
G53A
C74T
C131T
T143C
C146T
G149A
C155T
T182C
A197G
A200G
A218G
T269C
A296G
T297C
A302G
T326C
T338C

M

A57C
T74C
G114A
C159A
C174T
C190T
A192G
C231T
C243T
A264G
T324C
G339A
T345C
A360G
T363C
T387C
C394T
C408T

S

G63A
G66A
G120A
A135G
C172T
A219G
T225C
A240G
A261G
T306C
A312G
G315A
T336C
T357C
T366C
T396C
C417T
C444A

Deletions

S

1443, 1573, 1661-1663

Insertions

M

ins_3500:GCATATAT

S

ins_1482:CC, ins_1555:G, ins_1631:TTT, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references