PP_006W0AF.2

Version 2

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Argentina/PP_006W0AF.2/2014-05-05

D. O. Alonso, U. Perez-Sautu, C. M. Bellomo, K. Prieto, A. Iglesias, R. Coelho, N. Periolo, I. Domenech, G. Talmon, R. Hansen, G. Palacios & V. P. Martinez

INEI - ANLIS Dr C G Malbran, Virologia

Sample details

Collection date

2014-05-05

Sampling location

Argentina (Chubut)

Isolate name

ARCH14/NRC1

Data use terms

Changed	User	Data use terms
2026-05-09 17:55	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

INSDC

INSDC accession L

MN850096.1

INSDC accession M

MN850091.1

INSDC accession S

MN850086.1

NCBI release date

2020-03-31

Host

human (Homo sapiens)

Host age

Host age bin

40 - 49

Host gender

Male

Host origin country

Argentina

Host disease

Hantavirus Pulmonary Syndrome

Host health outcome

Died

Exposure event

Exposure to rodents

Exposure setting

Home

Exposure details

Daily contact with rodents in poor habitat conditions

Sequencing

Sequencing instrument

illumina

Sequencing protocol

For whole-genome sequencing, we extracted RNA from peripheral blood of patients and prepared sequencing libraries by using target-enrichment technology and ANDV-specific probes.

Submission details

Submission ID

MN850096.1.L/MN850091.1.M/MN850086.1.S

Version comment

https://github.com/artic-network/artic-andv/blob/main/andv-metadata.csv

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-05-25 05:20:12 UTC

Date released

2026-06-25 14:23:19 UTC

Earliest release date

2020-03-31

Alignment and QC

Length L

6531 (99.5%)

# of SNPs L

364

Length M

3643 (99.2%)

# of SNPs M

165

Length S

1860 (99.1%)

# of SNPs S

130

# of inserted bases S

# of deleted bases S

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

T47C
C74T
G119A
C131T
C137T
C146T
G149A
C155T
C173T
A200G
A218G
C219T
A296G
A302G
T329C
T338C
A341G
T344C

M

G45A
T74C
C111T
G114A
A132G
G153A
C174T
A192G
T219A
A264G
C288A
G339A
A360G
A366G
T387C
C394T
C408T
C454T

S

G63A
G66A
C72T
G120A
A135G
A219G
T225C
T244C
A261G
T306C
A312G
G315A
A318G
T354C
T357C
A372G
G378A
A401G

Deletions

S

1443

Insertions

S

ins_1485:CTC, ins_1555:G, ins_1631:TT, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references