PP_006W0AF.1

PP_006W0AF.1
D. O. Alonso, U. Perez-Sautu, C. M. Bellomo, K. Prieto, A. Iglesias, R. Coelho, N. Periolo, I. Domenech, G. Talmon, R. Hansen, G. Palacios & V. P. Martinez

INEI - ANLIS Dr C G Malbran, Virologia

Sample details

Isolate name
ARCH14/NRC1

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-09 17:55insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2020-03-31

Submission details

Submission ID
MN850096.1.L/MN850091.1.M/MN850086.1.S
Submitting group
Date submitted
2026-05-09 17:55:42 UTC
Date released
2026-05-09 17:57:47 UTC
Earliest release date
2020-03-31

Alignment and QC

Length L
6531 (99.5%)
# of SNPs L
364
Length M
3643 (99.2%)
# of SNPs M
165
Length S
1860 (99.1%)
# of SNPs S
130
# of inserted bases S
7
# of deleted bases S
1

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

  • T47C
  • C74T
  • G119A
  • C131T
  • C137T
  • C146T
  • G149A
  • C155T
  • C173T
  • A200G
  • A218G
  • C219T
  • A296G
  • A302G
  • T329C
  • T338C
  • A341G
  • T344C

M

  • G45A
  • T74C
  • C111T
  • G114A
  • A132G
  • G153A
  • C174T
  • A192G
  • T219A
  • A264G
  • C288A
  • G339A
  • A360G
  • A366G
  • T387C
  • C394T
  • C408T
  • C454T

S

  • G63A
  • G66A
  • C72T
  • G120A
  • A135G
  • A219G
  • T225C
  • T244C
  • A261G
  • T306C
  • A312G
  • G315A
  • A318G
  • T354C
  • T357C
  • A372G
  • G378A
  • A401G
Deletions

S

1443
Insertions

S

ins_1485:CTC, ins_1555:G, ins_1631:TT, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

GPC

  • GPC:V8A
  • GPC:H294Y
  • GPC:V346I
  • GPC:T353I
  • GPC:I537V
  • GPC:I810L
  • GPC:T996N
  • GPC:T1023A

Gc

  • Gc:I159L
  • Gc:T345N
  • Gc:T372A

Gn

  • Gn:V8A
  • Gn:H294Y
  • Gn:V346I
  • Gn:T353I
  • Gn:I537V

N

  • N:K120R

NSs

  • NSs:Q5R
  • NSs:E33G
  • NSs:L35S
  • NSs:N47S
  • NSs:I62T

RdRp

  • RdRp:T141I
  • RdRp:S273T
  • RdRp:S338A
  • RdRp:R346K
  • RdRp:S438N
  • RdRp:A541V
  • RdRp:N1033D
  • RdRp:N1052S
  • RdRp:D1303E
  • RdRp:H1356Q
  • RdRp:S1440N
  • RdRp:I2109V
  • RdRp:T2113A
Deletions
N/A
Insertions
N/A

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