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PP_006VLSY.2
Version 2
PP_006VLSY.1
Previous version
PP_006VLSY.2
Latest version
All versions
Download
Download FASTA
Download metadata TSV
Argentina/PP_006VLSY.2/1997
G. Calderon,
D. Enria,
S. Levis,
S. P. Morzunov,
N. Pini,
J. E. Rowe,
M. Sabattini,
S. C. St Jeor &
S. C. St. Jeor
University of Nevada, Microbiology
Sample details
Collection date
1997
Sampling location
Argentina (Lechiguanas Islands, Entre Rios)
Isolate name
Of22819
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-09 17:55
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession M
AF028022.1
INSDC accession S
AF482714.1
NCBI release date
1997-12-01
Sampling
Anatomical part
Lung
Host
Host
yellow pygmy rice rat (Oligoryzomys flavescens)
Host origin country
Argentina
Submission details
Submission ID
AF028022.1.M/AF482714.1.S
Version comment
https://github.com/pathoplexus/curation_reports/issues/19
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-23 01:03:04 UTC
Date released
2026-05-25 17:22:51 UTC
Earliest release date
1997-12-01
Alignment and QC
Length M
3653 (100%)
# of SNPs M
777
# of inserted bases M
2
# of deleted bases M
20
Length S
1938 (100%)
# of SNPs S
309
# of inserted bases S
83
# of deleted bases S
16
Nucleotide mutations
Mutations called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
M
A
32
C
T
34
G
A
37
G
G
38
A
G
43
T
G
45
T
T
46
A
T
47
G
T
48
A
A
51
G
C
67
T
G
70
A
T
75
C
C
76
T
T
78
G
A
89
C
G
93
T
C
94
T
Show more
S
G
28
A
G
63
A
G
66
A
C
72
T
G
120
A
G
129
A
G
133
A
A
135
G
C
156
G
T
202
C
A
219
G
T
225
C
G
231
A
T
244
C
T
262
C
A
321
G
T
327
C
G
339
T
Show more
Deletions
M
3473, 3474, 3484, 3485, 3515-3520, 3528, 3529, 3549, 3559-3565
S
1398-1400, 1500, 1556, 1632, 1633, 1639, 1650, 1684-1688, 1745, 1746
Insertions
M
ins_50:A, ins_3477:A
S
ins_1334:AG, ins_1337:AT, ins_1341:GAGCC, ins_1345:C, ins_1347:CC, ins_1349:AAGAGCCAGAACTAGTCAATATC, ins_1357:ATGTTGGTTGGGTG, ins_1383:T, ins_1451:A, ins_1483:C, ins_1537:TTAAT, ins_1544:CCA, ins_1577:ATAGA, ins_1583:AA, ins_1595:ATAGA, ins_1660:AA, ins_1666:GTTAATCA, ins_1756:T
Amino acid substitutions
Substitutions called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
GPC
GPC:
V
7
I
GPC:
Y
13
S
GPC:
Y
40
I
GPC:
I
42
V
GPC:
S
51
P
GPC:
A
54
T
GPC:
I
58
L
GPC:
A
74
T
GPC:
F
78
Y
GPC:
S
97
A
GPC:
A
102
S
GPC:
T
104
A
GPC:
I
114
V
GPC:
P
117
A
GPC:
L
153
I
GPC:
T
167
I
GPC:
V
172
I
GPC:
S
199
A
Show more
Gc
Gc:
M
5
L
Gc:
I
19
V
Gc:
P
70
N
Gc:
S
101
A
Gc:
P
231
T
Gc:
E
282
D
Gc:
T
372
H
Gc:
L
408
V
Gc:
I
466
V
Gc:
L
469
F
Gc:
M
473
L
Gc:
V
476
I
Gn
Gn:
V
7
I
Gn:
Y
13
S
Gn:
Y
40
I
Gn:
I
42
V
Gn:
S
51
P
Gn:
A
54
T
Gn:
I
58
L
Gn:
A
74
T
Gn:
F
78
Y
Gn:
S
97
A
Gn:
A
102
S
Gn:
T
104
A
Gn:
I
114
V
Gn:
P
117
A
Gn:
L
153
I
Gn:
T
167
I
Gn:
V
172
I
Gn:
S
199
A
Show more
N
N:
A
31
T
N:
D
38
E
N:
K
120
R
N:
A
121
S
N:
G
226
S
N:
D
234
E
N:
E
238
D
N:
V
252
A
N:
A
253
P
N:
S
259
A
N:
M
263
A
N:
D
279
E
N:
I
281
V
N:
E
297
D
N:
S
332
A
NSs
NSs:
R
3
K
NSs:
Q
5
R
NSs:
T
12
R
NSs:
E
33
G
NSs:
L
35
S
NSs:
G
37
D
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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