PP_006VLSY.1

PP_006VLSY.1
G. Calderon, D. Enria, S. Levis, S. P. Morzunov, N. Pini, J. E. Rowe, M. Sabattini, S. C. St Jeor & S. C. St. Jeor

University of Nevada, Microbiology

Sample details

Isolate name
Of22819

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-09 17:55insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession M
INSDC accession S
NCBI release date
1997-12-01

Host

Host

Submission details

Submission ID
AF028022.1.M/AF482714.1.S
Submitting group
Date submitted
2026-05-09 17:55:42 UTC
Date released
2026-05-09 17:56:44 UTC
Earliest release date
1997-12-01

Alignment and QC

Length M
3653 (100%)
# of SNPs M
777
# of inserted bases M
2
# of deleted bases M
20
Length S
1938 (100%)
# of SNPs S
309
# of inserted bases S
83
# of deleted bases S
16

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

M

  • A32C
  • T34G
  • A37G
  • G38A
  • G43T
  • G45T
  • T46A
  • T47G
  • T48A
  • A51G
  • C67T
  • G70A
  • T75C
  • C76T
  • T78G
  • A89C
  • G93T
  • C94T

S

  • G28A
  • G63A
  • G66A
  • C72T
  • G120A
  • G129A
  • G133A
  • A135G
  • C156G
  • T202C
  • A219G
  • T225C
  • G231A
  • T244C
  • T262C
  • A321G
  • T327C
  • G339T
Deletions

M

3473, 3474, 3484, 3485, 3515-3520, 3528, 3529, 3549, 3559-3565

S

1398-1400, 1500, 1556, 1632, 1633, 1639, 1650, 1684-1688, 1745, 1746
Insertions

M

ins_50:A, ins_3477:A

S

ins_1334:AG, ins_1337:AT, ins_1341:GAGCC, ins_1345:C, ins_1347:CC, ins_1349:AAGAGCCAGAACTAGTCAATATC, ins_1357:ATGTTGGTTGGGTG, ins_1383:T, ins_1451:A, ins_1483:C, ins_1537:TTAAT, ins_1544:CCA, ins_1577:ATAGA, ins_1583:AA, ins_1595:ATAGA, ins_1660:AA, ins_1666:GTTAATCA, ins_1756:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

GPC

  • GPC:V7I
  • GPC:Y13S
  • GPC:Y40I
  • GPC:I42V
  • GPC:S51P
  • GPC:A54T
  • GPC:I58L
  • GPC:A74T
  • GPC:F78Y
  • GPC:S97A
  • GPC:A102S
  • GPC:T104A
  • GPC:I114V
  • GPC:P117A
  • GPC:L153I
  • GPC:T167I
  • GPC:V172I
  • GPC:S199A

Gc

  • Gc:M5L
  • Gc:I19V
  • Gc:P70N
  • Gc:S101A
  • Gc:P231T
  • Gc:E282D
  • Gc:T372H
  • Gc:L408V
  • Gc:I466V
  • Gc:L469F
  • Gc:M473L
  • Gc:V476I

Gn

  • Gn:V7I
  • Gn:Y13S
  • Gn:Y40I
  • Gn:I42V
  • Gn:S51P
  • Gn:A54T
  • Gn:I58L
  • Gn:A74T
  • Gn:F78Y
  • Gn:S97A
  • Gn:A102S
  • Gn:T104A
  • Gn:I114V
  • Gn:P117A
  • Gn:L153I
  • Gn:T167I
  • Gn:V172I
  • Gn:S199A

N

  • N:A31T
  • N:D38E
  • N:K120R
  • N:A121S
  • N:G226S
  • N:D234E
  • N:E238D
  • N:V252A
  • N:A253P
  • N:S259A
  • N:M263A
  • N:D279E
  • N:I281V
  • N:E297D
  • N:S332A

NSs

  • NSs:R3K
  • NSs:Q5R
  • NSs:T12R
  • NSs:E33G
  • NSs:L35S
  • NSs:G37D
Deletions
N/A
Insertions
N/A

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