PP_0046QGW.2

Cote_d'Ivoire/PP_0046QGW.2/2017-09-04
Xiaomin Dong, Steven Edwards, Yi Mo Deng, Ian Barr, Arada Hirankitti & Clyde Dapat

WHO Collaborating Centre for Reference and Research on Influenza

Sample details

Collection date
2017-09-04
Sampling location
Cote d'Ivoire (Comoe)
City
Indenie-Djuablin
GISAID Isolate ID
EPI_ISL_2543815

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-24 06:50clydeOPEN
Data use terms URL

Lineage

Lineage
A.D.2.2

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Sampling

Sample type
Nasopharyngeal

Host

Host gender
Female

Submission details

Submission ID
hRSV/A/Cote_d'Ivoire/IPCI-022/2017
Submitting group
Date submitted
2025-10-02 15:57:19 UTC
Date released
2025-10-03 10:38:16 UTC
Earliest release date
2025-09-24

Alignment and QC

Length
15204 (99.8%)
# of SNPs
99
# of inserted bases
3
# of deleted bases
1

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T66A
  • A67G
  • G808A
  • C850T
  • C999A
  • G1050A
  • T1359C
  • T1398C
  • T1548C
  • C1788T
  • C1806T
  • T1911C
  • G2022A
  • T2165C
  • A2392G
  • T2481C
  • T2899C
  • C3061A
Deletions

4592
Insertions

ins_547:AG, ins_3183:G

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:K272M

G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G224E
  • G:I265L
  • G:P274L
  • G:Q278L
  • G:D284G

L

  • L:P171L
  • L:R256K
  • L:L922I
  • L:L1438Q
  • L:N1723S

M

  • M:P44Q

M2-1

  • M2-1:S176P

M2-2

  • M2-2:Y24C

N

  • N:V352A

P

  • P:L55P
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue