PP_0046QGW.1

Cote_d'Ivoire/PP_0046QGW.1/2017-09-04
Xiaomin Dong, Steven Edwards, Yi Mo Deng, Ian Barr, Arada Hirankitti & Clyde Dapat

WHO Collaborating Centre for Reference and Research on Influenza

Sample details

Collection date
2017-09-04
Sampling location
Cote d'Ivoire (Comoe)
City
Indenie-Djuablin

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
A.D.2.2

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Sampling

Sample type
Nasopharyngeal

Host

Host gender
Female

Submission details

Submission ID
hRSV/A/Cote_d'Ivoire/IPCI-022/2017
Submitting group
Date submitted
2025-09-24 06:50:43 UTC
Date released
2025-09-24 07:09:22 UTC
Earliest release date
2025-09-24

Alignment and QC

Length
15204 (99.8%)
# of SNPs
99
# of inserted bases
3
# of deleted bases
1

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T66A
  • A67G
  • G808A
  • C850T
  • C999A
  • G1050A
  • T1359C
  • T1398C
  • T1548C
  • C1788T
  • C1806T
  • T1911C
  • G2022A
  • T2165C
  • A2392G
  • T2481C
  • T2899C
  • C3061A
Deletions
4592
Insertions
ins_547:AG, ins_3183:G

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:K272M

G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G224E
  • G:I265L
  • G:P274L
  • G:Q278L
  • G:D284G

L

  • L:P171L
  • L:R256K
  • L:L922I
  • L:L1438Q
  • L:N1723S

M

  • M:P44Q

M2-1

  • M2-1:S176P

M2-2

  • M2-2:Y24C

N

  • N:V352A

P

  • P:L55P
Deletions
N/A
Insertions
N/A

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