PP_00339GJ.3

USA/PP_00339GJ.3/2023-08-23
Shawn Freed Jr, Sarah Chandler, Sarah Uhm, Dikchha Gurung, Ava Butz, Kaylee Herzog & Joseph R. Fauver

University of Nebraska Medical Center

Sample details

Collection date
2023-08-23
Sampling location
USA (Lincoln, Nebraska)

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-20 01:57josephfauverOPEN
2025-08-14 03:45josephfauverRESTRICTED until 2026-08-13
Data use terms URL

Lineage

Lineage
1A

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Host

Host

Sequencing

Sequencing instrument
Illumina NovaSeq
Sequencing protocol
IDT xGen WNV

Submission details

Submission ID
UNMC0708
Submitting group
Date submitted
2025-08-20 02:00:01 UTC
Date released
2025-08-20 02:01:04 UTC
Earliest release date
2025-08-14

Alignment and QC

Length
10260 (93%)
# of SNPs
112

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • C456T
  • A630G
  • A772G
  • A981T
  • T1143C
  • T1235A
  • C1395T
  • T1442C
  • C1465T
  • A1527G
  • G1662A
  • G1722A
  • C1750T
  • C2109T
  • C2304T
  • C2328T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:R188K

NS2B

  • NS2B:I26V
  • NS2B:I107V

NS4B

  • NS4B:L33F
  • NS4B:I240M

NS5

  • NS5:K314R
  • NS5:A860T

env

  • env:F90Y
  • env:V159A
  • env:L167F
  • env:I481V

prM

  • prM:T103A
Deletions
N/A
Insertions
N/A

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