PP_00339GJ.2

Display Name: USA/PP_00339GJ.2/2023-08-23
Shawn Freed Jr, Sarah Chandler, Sarah Uhm, Dikchha Gurung, Ava Butz, Kaylee Herzog & Joseph R. Fauver

Sample details

Collection date
2023-08-23
Country
USA
Admin level 1
Nebrsaka
Admin level 2
Lincoln

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-20 01:57josephfauverOPEN
2025-08-14 03:45josephfauverRESTRICTED until 2026-08-13
Data use terms URL

Lineage

Lineage
1A

Authors

Author affiliations
University of Nebraska Medical Center

Host

Host name - scientific
Culex tarsalis

Sequencing

Sequencing instrument
Illumina NovaSeq
Sequencing protocol
IDT xGen WNV

Alignment and QC metrics

Length
10260
Completeness
93.03%
# of SNPs
112
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
UNMC0708
Submitting group
Date submitted
2025-08-20 01:54:50 UTC
Date released
2025-08-20 01:56:35 UTC
Earliest release date
2025-08-14

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • C456T
  • A630G
  • A772G
  • A981T
  • T1143C
  • T1235A
  • C1395T
  • T1442C
  • C1465T
  • A1527G
  • G1662A
  • G1722A
  • C1750T
  • C2109T
  • C2304T
  • C2328T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K

    • NS2B

  • NS2B:I26V
  • NS2B:I107V

    • NS4B

  • NS4B:L33F
  • NS4B:I240M

    • NS5

  • NS5:K314R
  • NS5:A860T

    • env

  • env:F90Y
  • env:V159A
  • env:L167F
  • env:I481V

    • prM

  • prM:T103A
    • Deletions
    None
    Insertions
    None

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