PP_002KU2V.2

Kenya/PP_002KU2V.2/2016-04-05
E. Kamau, J. R. Otieno, N. Murunga, J. U. Nyiro, J. W. Oketch, J. M. Ngoi, Z. R. de Laurent, A. Mwema, C. N. Agoti & D. J. Nokes

KEMRI-Wellcome Trust, Epidemiology and Demography

Sample details

Collection date
2016-04-05
Sampling location
Kenya
Isolate name
KHDSS/106/05-Apr-2016/MAT

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
B.D.4.1

INSDC

INSDC accession
NCBI release date
2020-04-26
NCBI update date
2020-04-26

Host

Host

Submission details

Submission ID
MN365407.1
Submitting group
Date submitted
2026-10-10 06:02:13 UTC
Date released
2026-10-10 06:03:26 UTC
Earliest release date
2020-04-26

Files

Annotations

Alignment and QC

Length
15249 (100%)
# of SNPs
97
# of inserted bases
27

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • G1A
  • C3G
  • C116T
  • G513T
  • G545A
  • G579A
  • G1385A
  • A1597G
  • T1846C
  • G1978A
  • C2198T
  • C2483T
  • T2529C
  • C2679T
  • C2886T
  • C3067T
  • C3082T
  • C3146T
Deletions
N/A
Insertions
ins_0:TACTACAAACTTGCACACTCGAAAAAA

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:K65E
  • F:R191K
  • F:M206I
  • F:R209Q
  • F:K551R

G

  • G:A74V
  • G:T131A
  • G:I137T
  • G:L217P
  • G:Y285H
  • G:I288T
  • G:I310T
  • G:*311Q

L

  • L:T105I
  • L:I183N
  • L:A1479V
  • L:V1716I
  • L:T1987I

M2-2

  • M2-2:I2T

N

  • N:V97I

P

  • P:T60I

SH

  • SH:D64N
Deletions
N/A
Insertions
N/A

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