PP_002KU2V.1

Display Name: Kenya/PP_002KU2V.1/2016-04-05
E. Kamau, J. R. Otieno, N. Murunga, J. U. Nyiro, J. W. Oketch, J. M. Ngoi, Z. R. de Laurent, A. Mwema, C. N. Agoti & D. J. Nokes

Sample details

Collection date
2016-04-05
Country
Kenya
Isolate name
KHDSS/106/05-Apr-2016/MAT

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:46insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.4.1

Authors

Author affiliations
KEMRI-Wellcome Trust, Epidemiology and Demography

INSDC

INSDC accession
NCBI release date
2020-04-26
NCBI update date
2020-04-26

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15249
Completeness
100.00%
# of SNPs
97
# of inserted bases
27
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
MN365407.1
Submitting group
Date submitted
2025-05-22 14:45:31 UTC
Date released
2025-05-22 14:51:33 UTC
Earliest release date
2020-04-26

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G1A
  • C3G
  • C116T
  • G513T
  • G545A
  • G579A
  • G1385A
  • A1597G
  • T1846C
  • G1978A
  • C2198T
  • C2483T
  • T2529C
  • C2679T
  • C2886T
  • C3067T
  • C3082T
  • C3146T
    • Deletions
    None
    Insertions
    ins_0:TACTACAAACTTGCACACTCGAAAAAA

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:K65E
  • F:R191K
  • F:M206I
  • F:R209Q
  • F:K551R

    • G

  • G:A74V
  • G:T131A
  • G:I137T
  • G:L217P
  • G:Y285H
  • G:I288T
  • G:I310T
  • G:*311Q

    • L

  • L:T105I
  • L:I183N
  • L:A1479V
  • L:V1716I
  • L:T1987I

    • M2-2

  • M2-2:I2T

    • N

  • N:V97I

    • P

  • P:T60I

    • SH

  • SH:D64N
    • Deletions
    None
    Insertions
    None

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