PP_002KPQP.2

USA/PP_002KPQP.2/2013
H. Chu, E. Scott & P. Roychoudhury

University of Washington, Medicine

Sample details

Collection date
2013
Sampling location
USA (Seattle)
Isolate name
GH130302/USA/2013

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
B.D.4

INSDC

INSDC accession
NCBI release date
2020-05-23
NCBI update date
2020-05-23

Host

Host

Submission details

Submission ID
MN125662.1
Submitting group
Date submitted
2025-12-20 08:28:44 UTC
Date released
2025-12-20 08:36:44 UTC
Earliest release date
2020-05-23

Alignment and QC

Length
15095 (98.9%)
# of SNPs
148
# of inserted bases
6
# of deleted bases
8
# of unknown bases
37

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • C212T
  • G513T
  • G579A
  • T624C
  • C829T
  • A868C
  • C994T
  • C1001T
  • C1008T
  • C1092A
  • A1093G
  • G1096T
  • A1097T
  • C1103A
  • T1306C
  • G1385A
  • T1621C
  • C1804T
Deletions
27-33, 7402
Insertions
ins_1099:ATAAGT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:L173S
  • F:R191K
  • F:N201S
  • F:M206I
  • F:R209K
  • F:T558I

G

  • G:A74I
  • G:H82L
  • G:I87M
  • G:S100G
  • G:A107T
  • G:T108A
  • G:P109A
  • G:P110T
  • G:T131A
  • G:T136R
  • G:I137T
  • G:N143K
  • G:I183T
  • G:K222I
  • G:P235L
  • G:I252T
  • G:I288T
  • G:I310T

L

  • L:V715I
  • L:A1479V
  • L:V1533F
  • L:A1712T
  • L:V1716I
  • L:T1987I

M2-1

  • M2-1:I181V

M2-2

  • M2-2:I2T

N

  • N:M1L
  • N:L3I
  • N:V97I

NS2

  • NS2:M14T

P

  • P:N200S
  • P:S203C

SH

  • SH:D64N
Deletions
N/A
Insertions

N

ins_N:1:IS

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