PP_002KPQP.1

USA/PP_002KPQP.1/2013
H. Chu, E. Scott & P. Roychoudhury

University of Washington, Medicine

Sample details

Collection date
2013
Sampling location
USA (Seattle)

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
B.D.4

INSDC

INSDC accession
NCBI release date
2020-05-23
NCBI update date
2020-05-23

Host

Host

Submission details

Submission ID
MN125662.1
Submitting group
Date submitted
2025-05-22 14:45:31 UTC
Date released
2025-05-22 14:51:33 UTC
Earliest release date
2020-05-23

Files

Annotations

Alignment and QC

Length
15095 (98.9%)
# of SNPs
148
# of inserted bases
6
# of deleted bases
8
# of unknown bases
37

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • C212T
  • G513T
  • G579A
  • T624C
  • C829T
  • A868C
  • C994T
  • C1001T
  • C1008T
  • C1092A
  • A1093G
  • G1096T
  • A1097T
  • C1103A
  • T1306C
  • G1385A
  • T1621C
  • C1804T
Deletions
27-33, 7402
Insertions
ins_1099:ATAAGT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:L173S
  • F:R191K
  • F:N201S
  • F:M206I
  • F:R209K
  • F:T558I

G

  • G:A74I
  • G:H82L
  • G:I87M
  • G:S100G
  • G:A107T
  • G:T108A
  • G:P109A
  • G:P110T
  • G:T131A
  • G:T136R
  • G:I137T
  • G:N143K
  • G:I183T
  • G:K222I
  • G:P235L
  • G:I252T
  • G:I288T
  • G:I310T

L

  • L:V715I
  • L:A1479V
  • L:V1533F
  • L:A1712T
  • L:V1716I
  • L:T1987I

M2-1

  • M2-1:I181V

M2-2

  • M2-2:I2T

N

  • N:M1L
  • N:L3I
  • N:V97I

NS2

  • NS2:M14T

P

  • P:N200S
  • P:S203C

SH

  • SH:D64N
Deletions
N/A
Insertions

N

ins_N:1:IS

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