PP_001WH0P.1

Display Name: USA/PP_001WH0P.1/2022-10
J. Sereewit, B. E. Nunley, P. Roychoudhury & A. L. Greninger

Sample details

Collection date
2022-10
Country
USA
Admin level 1
WA

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:42insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.3

Authors

Author affiliations
University of Washington Dept. Laboratory Medicine and Pathology, Virology Division

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2024-05-12
NCBI update date
2024-05-12
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15048
Completeness
98.66%
# of SNPs
207
# of inserted bases
1
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
26
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PP760389.1
Submitting group
Date submitted
2025-05-22 14:41:42 UTC
Date released
2025-05-22 15:07:43 UTC
Earliest release date
2024-05-12

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • G240A
  • C379T
  • C531A
  • G587T
  • G590A
  • A644G
  • G766A
  • G1034A
  • G1050A
  • G1077A
  • T1359C
  • T1413A
  • T1422C
  • C1788T
  • C1806T
  • G1893A
    • Deletions
    None
    Insertions
    ins_3154:A

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T12I
  • F:K272M
  • F:S276N

    • G

  • G:I60V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T113I
  • G:A116V
  • G:V131D
  • G:I134K
  • G:N178G
  • G:P222L
  • G:G224E
  • G:P230T
  • G:S243I
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:D284G

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:L1705I
  • L:T1709S
  • L:N1723S
  • L:E1725G
  • L:G1731D

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:T77A

    • N

  • N:V352A

    • NS2

  • NS2:T16A

    • P

  • P:L55P
  • P:T92M
    • Deletions
    None
    Insertions
    None

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