PP_001GYY6.1

Display Name: Japan/PP_001GYY6.1/2019-08-02
T. Tamura & R. Saito

Sample details

Collection date
2019-08-02
Country
Japan
Isolate name
HRSV/A/Japan/19U006iso/2019

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:41insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.2.2

Authors

Author affiliations
Division of International Health; 1-757 Asahimachi dori, Niigata, Niigata 951-8510

INSDC

INSDC accession
NCBI release date
2025-05-02
NCBI update date
2025-05-02

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15226
Completeness
100.00%
# of SNPs
146
# of inserted bases
1
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
LC871610.1
Submitting group
Date submitted
2025-05-22 14:40:35 UTC
Date released
2025-05-22 14:57:03 UTC
Earliest release date
2025-05-02

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T66A
  • A67G
  • T468C
  • A526C
  • A552T
  • G558A
  • G637A
  • T781C
  • C990A
  • C1012T
  • G1050A
  • T1330C
  • T1359C
  • T1621C
  • T1647C
  • T1668C
  • T1776A
  • C1788T
    • Deletions
    None
    Insertions
    ins_4174:A

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:S275F

    • G

  • G:H67N
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:A122V
  • G:I133N
  • G:P143T
  • G:R151H
  • G:G224E
  • G:I265L
  • G:Y273H
  • G:D284G
  • G:E295K

    • L

  • L:N37D
  • L:P171L
  • L:R256K
  • L:L1438Q
  • L:K1722N
  • L:N1723S
  • L:I1741M
  • L:T1773M
  • L:I1950T

    • M2-1

  • M2-1:S176P
  • M2-1:A188V

    • M2-2

  • M2-2:P2S
  • M2-2:Y24C

    • N

  • N:V352A

    • P

  • P:L55P
  • P:T69I
    • Deletions
    None
    Insertions
    None

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