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The latest version is:PP_000TRT1.2

PP_000TRT1.1

Version 1

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USA/PP_000TRT1.1/2022-07

J. Sereewit, H. Xie, P. Roychoudhury & A. L. Greninger

UW Virology, Laboratory Medicine

Sample details

Collection date

2022-07

Sampling location

USA (WA)

Isolate name

MpxV/human/USA/WA-UW-072839/2022

Data use terms

Changed	User	Data use terms
2024-12-09 18:48	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

Clade & Lineage

Clade

IIb

Outbreak

sh2017

Lineage

B.1.1

INSDC

INSDC accession

OP169346.1

BioProject accession

PRJNA862948

BioSample accession

SAMN30174644

NCBI release date

2022-08-08

NCBI update date

2022-09-07

Host

human (Homo sapiens)

Submission details

Submission ID

OP169346.1

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2024-12-09 18:47:55 UTC

Date released

2024-12-09 18:51:44 UTC

Earliest release date

2022-08-08

Alignment and QC

Length

197178 (100%)

# of SNPs

# of deleted bases

# of ambiguous bases

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

G1262A
G2591A
G3111A
G3522A
C3818T
C7771T
G14000T
G15428A
A18769G
G21723A
C23564T
G25661A
T28175C
G30367A
G31053A
G34459A
G37202A
G38360A

Deletions

608, 609, 133177-133186, 150586-150602, 196616, 196617

Insertions

N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG001

OPG001:S105L

OPG002

OPG002:S54F

OPG003

OPG003:D264N

OPG025

OPG025:A423D

OPG047

OPG047:R48C

OPG053

OPG053:P78S

OPG056

OPG056:E125K

OPG057

OPG057:E353K

OPG071

OPG071:L108F

OPG072

OPG072:D56N

OPG092

OPG092:D196N

OPG093

OPG093:S30L
OPG093:D88N

OPG094

OPG094:M142I
OPG094:R194H

OPG098

OPG098:E162K

OPG105

OPG105:S734L

OPG109

OPG109:H740Y

OPG118

OPG118:K606E

OPG136

OPG136:D98N

OPG139

OPG139:A17T

OPG145

OPG145:E62K
OPG145:R243Q
OPG145:E435K

OPG150

OPG150:S307L

OPG176

OPG176:H221Y

OPG193

OPG193:L263F

OPG210

OPG210:D209N
OPG210:P722S
OPG210:M1741I