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Status
PP_000RGY4.2
All versions
PP_000RGY4.1
(Revised)
PP_000RGY4.2
(Latest version)
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Display Name: Guinea/PP_000RGY4.2/2021-04-04
Naidenova,
E. V.; Krasnov,
Y. M.; Zakharov,
K. S.; Agafonov,
D. A.; Senichkina,
A. M.; Guseva,
N. P.; Katyshev,
S. D.; Gurkin,
G. A.; Kartashov,
M. Y.; Shipovalov,
A. V.; Kabanov,
A. S.; Boumbaly,
S.; Diallo,
M. G.; Bah,
M. B.
Submission details
Submission ID
PQ361722.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:15:40 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-10-03 02:19
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Russian Antiplague Research Institute 'Microbe', Microbiology
Alignment states and QC metrics S
Completeness S
98.62%
Length S
1653
Total ambiguous nucs S
0
Total deleted nucs S
18
Total frame shifts S
0
Total inserted nucs S
19
Total SNPs S
235
Total unknown nucs S
3
Sample details
Collection subdivision level 1
Faranah
Collection country
Guinea
Collection date
2021-04-04
Isolate name
5439
Host
Host name scientific
Rhipicephalus geigyi
Host taxon id
136141
INSDC
INSDC accession S
PQ361722.1
NCBI release date
2024-10-02
Nucleotide mutations
Substitutions
S
S:
G
20
T
S:
T
46
A
S:
T
49
C
S:
A
50
T
S:
G
54
A
S:
T
79
C
S:
A
81
G
S:
G
99
A
S:
G
100
A
S:
C
115
T
S:
A
121
G
S:
G
134
A
S:
C
139
T
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
G
171
A
S:
T
175
A
Show more
Deletions
S:1542-1547, S:1573, S:1574, S:1610-1619
Insertions
ins_S:1563:TATG, ins_S:1566:AT, ins_S:1579:ATC, ins_S:1629:CTATCTTTCA
Amino acid mutations
Substitutions
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
P
192
L
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
K
265
R
NP:
R
270
K
NP:
S
301
G
NP:
A
307
P
Show more
Deletions
None
Insertions
None
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