PP_000RGY4.1

Display Name: Guinea/PP_000RGY4.1/2021-04-04
E. V. Naidenova, Y. M. Krasnov, K. S. Zakharov, D. A. Agafonov, A. M. Senichkina, N. P. Guseva, S. D. Katyshev, G. A. Gurkin, M. Y. Kartashov, A. V. Shipovalov, A. S. Kabanov, S. Boumbaly, M. G. Diallo & M. B. Bah

Sample details

Collection date
2021-04-04
Country
Guinea
Admin level 1
Faranah
Isolate name
5439

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-10-03 02:19insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Russian Antiplague Research Institute 'Microbe', Microbiology

INSDC

INSDC accession S
NCBI release date
2024-10-02

Host

Host taxon ID
Host name - scientific
Rhipicephalus geigyi

Alignment and QC metrics S

Length S
1653
Completeness S
98.62%
# of SNPs S
259
# of inserted bases S
1
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
3
# of frame shifts S
0
# of stop codons S
0

Submission details

Submission ID
PQ361722.1.S
Submitting group
Date submitted
2024-10-03 02:19:03 UTC
Date released
2024-10-03 02:19:14 UTC
Earliest release date
2024-10-02

Lineage

Segment S Lineage
V

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G20T
  • S:T46A
  • S:T49C
  • S:A50T
  • S:G54A
  • S:T79C
  • S:A81G
  • S:G99A
  • S:G100A
  • S:C115T
  • S:A121G
  • S:G134A
  • S:C139T
  • S:C142T
  • S:T157C
  • S:C166T
  • S:G171A
  • S:T175A
    • Deletions
    None
    Insertions
    ins_S:1579:C

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:N9S
  • NP:R15K
  • NP:V27M
  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:P192L
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:K265R
  • NP:R270K
  • NP:S301G
  • NP:A307P
    • Deletions
    None
    Insertions
    None

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