PP_000RF4U.2

Display Name: North_Macedonia/PP_000RF4U.2/2023
D. Jakimovski, K. Spasovska, K. Grozdanovski, G. Rangelov, M. Cvetanovska, F. Cana, P. Banovic, V. Simin, I. Bogdan, D. Mijatovic, A. Cvetkovikj, I. Djadjovski, I. Christova, E. Meletis, P. Kostoulas, B. Zana, Z. Lanszki, T. Gorfol, Z. Tauber, G. Kemenesi & P. Urban

Submission details

Submission ID
PP729066.1.L/PP729065.1.M/PP729064.1.S
Submitting group
Date submitted
2024-09-26 15:01:57 UTC
Date released
2024-09-26 15:22:15 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Pecs, Szentagothai Research Center

Alignment and QC metrics L

Completeness L
99.91%
Length L
12141
Total ambiguous nucs L
0
Total deleted nucs L
9
Total frame shifts L
0
Total inserted nucs L
53
Total SNPs L
1286
Total unknown nucs L
0

Alignment and QC metrics M

Completeness M
99.57%
Length M
5341
Total ambiguous nucs M
0
Total deleted nucs M
6
Total frame shifts M
0
Total inserted nucs M
4
Total SNPs M
1045
Total unknown nucs M
0

Alignment and QC metrics S

Completeness S
98.56%
Length S
1649
Total ambiguous nucs S
0
Total deleted nucs S
16
Total frame shifts S
0
Total inserted nucs S
17
Total SNPs S
231
Total unknown nucs S
0

Sample details

Earliest release date
2024-05-05
Collection country
North Macedonia
Collection date
2023
Collection date (lower bound)
2023-01-01
Collection date (upper bound)
2023-12-31
Isolate name
Kuchica/North Macedonia-1/2023

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2024-05-05

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:A35G
  • L:A42T
  • L:G43C
  • L:T49C
  • L:A53G
  • L:C59T
  • L:C63G
  • L:C64T
  • L:T65C
  • L:T67C
  • L:A72G
  • L:A73T
  • L:A91G
  • L:G93A
  • L:C100T
  • L:A109G
  • L:T131A
  • L:C148T

    • M

  • M:T40C
  • M:G50A
  • M:A51G
  • M:A61T
  • M:T67C
  • M:T68C
  • M:T71A
  • M:G76C
  • M:A80G
  • M:T83C
  • M:G84A
  • M:C85T
  • M:T86C
  • M:C92T
  • M:T100C
  • M:T102C
  • M:C103T
  • M:A108G

    • S

  • S:T49C
  • S:A50T
  • S:G54A
  • S:T79C
  • S:A81G
  • S:G99A
  • S:G100A
  • S:A109G
  • S:C115T
  • S:A121G
  • S:G134A
  • S:C142T
  • S:T157C
  • S:G171A
  • S:T175A
  • S:C178A
  • S:T182C
  • S:C187T
    • Deletions
    L:11982-11990, M:318-323, S:1542-1547, S:1610-1619
    Insertions
    ins_S:1563:TATG, ins_S:1629:CTATCTTTCA, ins_S:1577:A, ins_S:1566:AT, ins_M:335:ACA, ins_M:5171:T, ins_L:12092:CTATTCATACCAGTTTTATTATTTGAAGGGTATGGGGGG, ins_L:11928:CG, ins_L:11973:ATACCATAA, ins_L:57:AT, ins_L:25:T

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:C11Y
  • GPC:C15L
  • GPC:E19G
  • GPC:T20A
  • GPC:S23Q
  • GPC:H24P
  • GPC:E26A
  • GPC:R28E
  • GPC:K31G
  • GPC:T32A
  • GPC:D33N
  • GPC:M35T
  • GPC:T37A

    • NP

  • NP:N9S
  • NP:R15K
  • NP:V27M
  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:K265R
  • NP:R270K
  • NP:S301G
  • NP:A307P
  • NP:Y311F

    • RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:D55A
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:I131M
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:I176M
  • RdRp:A202V
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K218R
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:V352I
  • RdRp:N390S
    • Deletions
    GPC:77, GPC:105
    Insertions
    ins_GPC:114:T

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