PP_000RF4U.2

Display Name: North_Macedonia/PP_000RF4U.2/2023
D. Jakimovski, K. Spasovska, K. Grozdanovski, G. Rangelov, M. Cvetanovska, F. Cana, P. Banovic, V. Simin, I. Bogdan, D. Mijatovic, A. Cvetkovikj, I. Djadjovski, I. Christova, E. Meletis, P. Kostoulas, B. Zana, Z. Lanszki, T. Gorfol, Z. Tauber, G. Kemenesi & P. Urban

Sample details

Collection date
2023
Collection date (lower bound)
2023-01-01
Collection date (upper bound)
2023-12-31
Isolate name
Kuchica/North Macedonia-1/2023
Collection country
North Macedonia

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Pecs, Szentagothai Research Center

INSDC

NCBI release date
2024-05-05
INSDC accession L
INSDC accession M
INSDC accession S

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics L

Length L
12141
Total SNPs L
1286
Total inserted nucs L
53
Total deleted nucs L
9
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.91%

Alignment and QC metrics M

Length M
5341
Total SNPs M
1045
Total inserted nucs M
4
Total deleted nucs M
6
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
99.57%

Alignment and QC metrics S

Length S
1649
Total SNPs S
231
Total inserted nucs S
17
Total deleted nucs S
16
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
98.56%

Submission details

Submission ID
PP729066.1.L/PP729065.1.M/PP729064.1.S
Submitting group
Date submitted
2024-09-26 15:01:57 UTC
Date released
2024-09-26 15:22:15 UTC
Earliest release date
2024-05-05

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:A35G
  • L:A42T
  • L:G43C
  • L:T49C
  • L:A53G
  • L:C59T
  • L:C63G
  • L:C64T
  • L:T65C
  • L:T67C
  • L:A72G
  • L:A73T
  • L:A91G
  • L:G93A
  • L:C100T
  • L:A109G
  • L:T131A
  • L:C148T

    • M

  • M:T40C
  • M:G50A
  • M:A51G
  • M:A61T
  • M:T67C
  • M:T68C
  • M:T71A
  • M:G76C
  • M:A80G
  • M:T83C
  • M:G84A
  • M:C85T
  • M:T86C
  • M:C92T
  • M:T100C
  • M:T102C
  • M:C103T
  • M:A108G

    • S

  • S:T49C
  • S:A50T
  • S:G54A
  • S:T79C
  • S:A81G
  • S:G99A
  • S:G100A
  • S:A109G
  • S:C115T
  • S:A121G
  • S:G134A
  • S:C142T
  • S:T157C
  • S:G171A
  • S:T175A
  • S:C178A
  • S:T182C
  • S:C187T
    • Deletions
    L:11982-11990, M:318-323, S:1542-1547, S:1610-1619
    Insertions
    ins_L:25:T, ins_L:57:AT, ins_L:11928:CG, ins_L:11973:ATACCATAA, ins_L:12092:CTATTCATACCAGTTTTATTATTTGAAGGGTATGGGGGG, ins_M:335:ACA, ins_M:5171:T, ins_S:1563:TATG, ins_S:1566:AT, ins_S:1577:A, ins_S:1629:CTATCTTTCA

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:C11Y
  • GPC:C15L
  • GPC:E19G
  • GPC:T20A
  • GPC:S23Q
  • GPC:H24P
  • GPC:E26A
  • GPC:R28E
  • GPC:K31G
  • GPC:T32A
  • GPC:D33N
  • GPC:M35T
  • GPC:T37A

    • NP

  • NP:N9S
  • NP:R15K
  • NP:V27M
  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:K265R
  • NP:R270K
  • NP:S301G
  • NP:A307P
  • NP:Y311F

    • RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:D55A
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:I131M
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:I176M
  • RdRp:A202V
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K218R
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:V352I
  • RdRp:N390S
    • Deletions
    GPC:77, GPC:105
    Insertions
    ins_GPC:114:T

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