PP_000RF4U.2

Display Name: North_Macedonia/PP_000RF4U.2/2023
D. Jakimovski, K. Spasovska, K. Grozdanovski, G. Rangelov, M. Cvetanovska, F. Cana, P. Banovic, V. Simin, I. Bogdan, D. Mijatovic, A. Cvetkovikj, I. Djadjovski, I. Christova, E. Meletis, P. Kostoulas, B. Zana, Z. Lanszki, T. Gorfol, Z. Tauber, G. Kemenesi & P. Urban

Sample details

Collection date
2023
Country
North Macedonia
Isolate name
Kuchica/North Macedonia-1/2023

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Pecs, Szentagothai Research Center

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2024-05-05

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics L

Length L
12141
Completeness L
99.91%
# of SNPs L
1297
# of inserted bases L
44
# of deleted bases L
0
# of ambiguous bases L
0
# of unknown bases L
0
# of frame shifts L
0
# of stop codons L
0

Alignment and QC metrics M

Length M
5341
Completeness M
99.57%
# of SNPs M
1050
# of inserted bases M
1
# of deleted bases M
3
# of ambiguous bases M
0
# of unknown bases M
0
# of frame shifts M
0
# of stop codons M
0

Alignment and QC metrics S

Length S
1649
Completeness S
98.56%
# of SNPs S
252
# of inserted bases S
1
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
# of stop codons S
0

Submission details

Submission ID
PP729066.1.L/PP729065.1.M/PP729064.1.S
Submitting group
Date submitted
2024-09-26 15:01:57 UTC
Date released
2024-09-26 15:22:15 UTC
Earliest release date
2024-05-05

Lineage

Segment S Lineage
V

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:A35G
  • L:A42T
  • L:G43C
  • L:T49C
  • L:A53G
  • L:C59T
  • L:C63G
  • L:C64T
  • L:T65C
  • L:T67C
  • L:A72G
  • L:A73T
  • L:A91G
  • L:G93A
  • L:C100T
  • L:A109G
  • L:T131A
  • L:C148T

    • M

  • M:T40C
  • M:G50A
  • M:A51G
  • M:A61T
  • M:T67C
  • M:T68C
  • M:T71A
  • M:G76C
  • M:A80G
  • M:T83C
  • M:G84A
  • M:C85T
  • M:T86C
  • M:C92T
  • M:T100C
  • M:T102C
  • M:C103T
  • M:A108G

    • S

  • S:T49C
  • S:A50T
  • S:G54A
  • S:T79C
  • S:A81G
  • S:G99A
  • S:G100A
  • S:A109G
  • S:C115T
  • S:A121G
  • S:G134A
  • S:C142T
  • S:T157C
  • S:G171A
  • S:T175A
  • S:C178A
  • S:T182C
  • S:C187T
    • Deletions
    M:333-335
    Insertions
    ins_L:25:T, ins_L:57:AT, ins_L:11928:CG, ins_L:12092:CTATTCATACCAGTTTTATTATTTGAAGGGTATGGGGGG, ins_M:5171:T, ins_S:1577:A

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:C11Y
  • GPC:C15L
  • GPC:E19G
  • GPC:T20A
  • GPC:S23Q
  • GPC:H24P
  • GPC:E26A
  • GPC:R28E
  • GPC:K31G
  • GPC:T32A
  • GPC:D33N
  • GPC:M35T
  • GPC:T37A

    • NP

  • NP:N9S
  • NP:R15K
  • NP:V27M
  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:K265R
  • NP:R270K
  • NP:S301G
  • NP:A307P
  • NP:Y311F

    • RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:D55A
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:I131M
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:I176M
  • RdRp:A202V
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K218R
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:V352I
  • RdRp:N390S
    • Deletions
    GPC:77
    Insertions
    None

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