PP_000RF4U.1

North_Macedonia/PP_000RF4U.1/2023
D. Jakimovski, K. Spasovska, K. Grozdanovski, G. Rangelov, M. Cvetanovska, F. Cana, P. Banovic, V. Simin, I. Bogdan, D. Mijatovic, A. Cvetkovikj, I. Djadjovski, I. Christova, E. Meletis, P. Kostoulas, B. Zana, Z. Lanszki, T. Gorfol, Z. Tauber, G. Kemenesi & P. Urban

University of Pecs, Szentagothai Research Center

Sample details

Collection date
2023
Sampling location
North Macedonia
Isolate name
Kuchica/North Macedonia-1/2023

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2024-05-05

Host

Host

Submission details

Submission ID
PP729066.1.L/PP729065.1.M/PP729064.1.S
Submitting group
Date submitted
2024-08-27 12:10:45 UTC
Date released
2024-08-27 12:16:35 UTC
Earliest release date
2024-05-05

Lineage

Segment S Lineage
V

Alignment and QC

Length L
12141 (99.9%)
# of SNPs L
1297
# of inserted bases L
44
Length S
1649 (98.6%)
# of SNPs S
252
# of inserted bases S
1
Length M
5341 (99.6%)
# of SNPs M
1050
# of inserted bases M
1
# of deleted bases M
3

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • A35G
  • A42T
  • G43C
  • T49C
  • A53G
  • C59T
  • C63G
  • C64T
  • T65C
  • T67C
  • A72G
  • A73T
  • A91G
  • G93A
  • C100T
  • A109G
  • T131A
  • C148T

M

  • T40C
  • G50A
  • A51G
  • A61T
  • T67C
  • T68C
  • T71A
  • G76C
  • A80G
  • T83C
  • G84A
  • C85T
  • T86C
  • C92T
  • T100C
  • T102C
  • C103T
  • A108G

S

  • T49C
  • A50T
  • G54A
  • T79C
  • A81G
  • G99A
  • G100A
  • A109G
  • C115T
  • A121G
  • G134A
  • C142T
  • T157C
  • G171A
  • T175A
  • C178A
  • T182C
  • C187T
Deletions

M

333-335
Insertions

L

ins_25:T, ins_57:AT, ins_11928:CG, ins_12092:CTATTCATACCAGTTTTATTATTTGAAGGGTATGGGGGG

M

ins_5171:T

S

ins_1577:A

Amino acid mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:C11Y
  • GPC:C15L
  • GPC:E19G
  • GPC:T20A
  • GPC:S23Q
  • GPC:H24P
  • GPC:E26A
  • GPC:R28E
  • GPC:K31G
  • GPC:T32A
  • GPC:D33N
  • GPC:M35T
  • GPC:T37A

NP

  • NP:N9S
  • NP:R15K
  • NP:V27M
  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:K265R
  • NP:R270K
  • NP:S301G
  • NP:A307P
  • NP:Y311F

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:D55A
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:I131M
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:I176M
  • RdRp:A202V
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K218R
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:V352I
  • RdRp:N390S
Deletions

GPC

GPC:77
Insertions
N/A

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