PP_000R9SP.3

Display Name: Spain/PP_000R9SP.3/2021-04-01
Febrer-Sendra, B.; Fernandez-Soto, P.; Garcia-Bernalt Diego, J.; Crego-Vicente, B.; Negredo, A.; Munor-Bellido, J. L.; Belhassen-Garcia, M.; Sanchez-Seco, M. P.; Muro, A.

Submission details

Submission ID
OP776634.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:15:40 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
University of Salamanca, Parasitology Department

Alignment and QC metrics S

Completeness S
11.90%
Length S
200
Total ambiguous nucs S
1
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
15
Total unknown nucs S
0

Sample details

Earliest release date
2023-05-23
Collection country
Spain
Collection date
2021-04
Collection date (lower bound)
2021-04-01
Collection date (upper bound)
2021-04-30
Isolate name
P1

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession S
OP776634.1
NCBI release date
2023-05-23

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:A460G
  • S:C484A
  • S:A493G
  • S:A520G
  • S:C529T
  • S:T535C
  • S:G544A
  • S:A578C
  • S:G586A
  • S:T591A
  • S:G592A
  • S:C619T
  • S:A631T
  • S:A639G
  • S:A649G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:L179Q
  • NP:H195R
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue