PP_000R9SP.1

Display Name: Spain/PP_000R9SP.1/2021-04
B. Febrer-Sendra, P. Fernandez-Soto, J. Garcia-Bernalt Diego, B. Crego-Vicente, A. Negredo, J. L. Munor-Bellido, M. Belhassen-Garcia, M. P. Sanchez-Seco & A. Muro

Sample details

Collection date
2021-04
Country
Spain
Admin level 2
Europe
Isolate name
P1

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Salamanca, Parasitology Department

INSDC

INSDC accession S
NCBI release date
2023-05-23

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics S

Length S
200
Completeness S
11.90%
# of SNPs S
15
# of inserted bases S
0
# of deleted bases S
0
# of ambiguous bases S
1
# of unknown bases S
0
# of frame shifts S
0
# of stop codons S
0

Submission details

Submission ID
OP776634.1.S
Submitting group
Date submitted
2024-08-27 12:10:45 UTC
Date released
2024-08-27 12:16:05 UTC
Earliest release date
2023-05-23

Lineage

Segment S Lineage
III

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:A460G
  • S:C484A
  • S:A493G
  • S:A520G
  • S:C529T
  • S:T535C
  • S:G544A
  • S:A578C
  • S:G586A
  • S:T591A
  • S:G592A
  • S:C619T
  • S:A631T
  • S:A639G
  • S:A649G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:L179Q
  • NP:H195R
    • Deletions
    None
    Insertions
    None

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