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Status
PP_000R8M0.3
All versions
PP_000R8M0.1
(Revised)
PP_000R8M0.2
(Revised)
PP_000R8M0.3
(Latest version)
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Display Name: Turkey/PP_000R8M0.3/2021-01-01
Kalaycioglu,
A. T.; Oguzoglu,
T. C.; Ari,
O.; Durmaz,
R.; Engin,
A.; Bakir,
M.
Submission details
Submission ID
ON254095.1.S
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:15:40 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-08-27 12:11
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology
Alignment states and QC metrics S
Completeness S
100.00%
Length S
1673
Total ambiguous nucs S
0
Total deleted nucs S
16
Total frame shifts S
0
Total inserted nucs S
17
Total SNPs S
235
Total unknown nucs S
0
Sample details
Collection country
Turkey
Collection date
2021-01-01
Isolate name
TR-SIVAS-C22M-2021
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession S
ON254095.1
NCBI release date
2023-02-01
Nucleotide mutations
Substitutions
S
S:
T
49
C
S:
A
50
T
S:
G
54
A
S:
T
79
C
S:
A
81
G
S:
G
99
A
S:
G
100
A
S:
A
109
G
S:
C
115
T
S:
G
134
A
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
G
171
A
S:
T
175
A
S:
C
178
A
S:
T
182
C
S:
C
187
T
Show more
Deletions
S:1542-1547, S:1610-1619
Insertions
ins_S:1563:TATG, ins_S:1566:AT, ins_S:1577:A, ins_S:1629:CTATCTTTCA
Amino acid mutations
Substitutions
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
K
265
R
NP:
R
270
K
NP:
N
293
K
NP:
S
301
G
NP:
A
307
P
Show more
Deletions
None
Insertions
None
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