PP_000R8M0.1

Display Name: Turkey/PP_000R8M0.1/2021-01-01
Kalaycioglu, A. T.; Oguzoglu, T. C.; Ari, O.; Durmaz, R.; Engin, A.; Bakir, M.

Submission details

Submission ID
ON254095.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-08-27 12:10:45 UTC
Date released
2024-08-27 12:15:34 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology

Alignment states and QC metrics S

Completeness S
100.00%
Length S
1673
Total ambiguous nucs S
0
Total deleted nucs S
16
Total frame shifts S
0
Total inserted nucs S
17
Total SNPs S
235
Total unknown nucs S
0

Sample details

Collection subdivision level 2
Asia
Collection country
Turkey
Collection date
2021
Collection date (lower bound)
2021-01-01
Collection date (upper bound)
2021-12-31
Isolate name
TR-SIVAS-C22M-2021

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession S
ON254095.1
NCBI release date
2023-02-01

Nucleotide mutations

Substitutions

S

  • S:T49C
  • S:A50T
  • S:G54A
  • S:T79C
  • S:A81G
  • S:G99A
  • S:G100A
  • S:A109G
  • S:C115T
  • S:G134A
  • S:C142T
  • S:T157C
  • S:C166T
  • S:G171A
  • S:T175A
  • S:C178A
  • S:T182C
  • S:C187T
    • Deletions
    S:1542-1547, S:1610-1619
    Insertions
    ins_S:1563:TATG, ins_S:1566:AT, ins_S:1629:CTATCTTTCA, ins_S:1577:A

    Amino acid mutations

    Substitutions

    NP

  • NP:N9S
  • NP:R15K
  • NP:V27M
  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:K265R
  • NP:R270K
  • NP:N293K
  • NP:S301G
  • NP:A307P
    • Deletions
    None
    Insertions
    None