PP_0004H8T.2

Display Name: Iraq/PP_0004H8T.2/2023-12-12
Albaroodi, S. Y.; Alobaidii, W. A.; Abdullah, D. A.; Ola-Fadunsin, S. D.; Gimba, F. I.

Submission details

Submission ID
PP430511.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-26 15:01:22 UTC
Date released
2024-09-26 15:27:35 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:09insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
College of Veterinary Medicine, University of Mosul, Microbiology

Alignment states and QC metrics

Completeness
21.76%
Length
2400
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
27
Total stop codons
0
Total unknown nucs
0

Sample details

Collection subdivision level 1
Mosul
Collection country
Iraq
Collection date
2023-12-12
Collection date (lower bound)
2023-12-12
Collection date (upper bound)
2023-12-12
Isolate name
SWD99

Host

Host name scientific
Anatidae
Host taxon id
8830

INSDC

INSDC accession
PP430511.1
NCBI release date
2024-03-10
NCBI update date
2024-03-10

Lineage

Lineage
1A

Nucleotide mutations

Substitutions

  • G193A
  • A630G
  • G661C
  • C869A
  • G1074A
  • A1247C
  • A1320G
  • G1411T
  • C1434A
  • T1442C
  • C1465T
  • A1518T
  • G1544C
  • C1560T
  • T1656C
  • A1725G
  • G1806C
  • C1910G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NS1

  • NS1:A5P

    • capsid

  • capsid:A33T

    • env

  • env:Q94P
  • env:V149L
  • env:V159A
  • env:L167F
  • env:R193P
  • env:I253M
  • env:K280N
  • env:P315R
  • env:V358I
  • env:V364E
  • env:A419D
  • env:G448V
  • env:A482T

    • prM

  • prM:D66H
  • prM:A135D
    • Deletions
    None
    Insertions
    None