PP_0004H8T.3

Display Name: Iraq/PP_0004H8T.3/2023-12-12
S. Y. Albaroodi, W. A. Alobaidii, D. A. Abdullah, S. D. Ola-Fadunsin & F. I. Gimba

Sample details

Collection date
2023-12-12
Country
Iraq
Admin level 1
Mosul
Isolate name
SWD99

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:09insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
1A

Authors

Author affiliations
College of Veterinary Medicine, University of Mosul, Microbiology

INSDC

INSDC accession
NCBI release date
2024-03-10
NCBI update date
2024-03-10

Host

Host taxon ID
Host name - scientific
Anatidae

Alignment and QC metrics

Length
2400
Completeness
21.76%
# of SNPs
27
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PP430511.1
Submitting group
Date submitted
2024-10-29 17:09:23 UTC
Date released
2024-10-29 17:16:45 UTC
Earliest release date
2024-03-10

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G193A
  • A630G
  • G661C
  • C869A
  • G1074A
  • A1247C
  • A1320G
  • G1411T
  • C1434A
  • T1442C
  • C1465T
  • A1518T
  • G1544C
  • C1560T
  • T1656C
  • A1725G
  • G1806C
  • C1910G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:A5P

    • capsid

  • capsid:A33T

    • env

  • env:Q94P
  • env:V149L
  • env:V159A
  • env:L167F
  • env:R193P
  • env:I253M
  • env:K280N
  • env:P315R
  • env:V358I
  • env:V364E
  • env:A419D
  • env:G448V
  • env:A482T

    • prM

  • prM:D66H
  • prM:A135D
    • Deletions
    None
    Insertions
    None

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