PP_0081VV4.3

Bangladesh/IEDCR-HFMCH2501/2025-11-15
Md. Abdullah Omar Nasif, Mymuna Binte Mosaddeque, Manjur Hossain Khan Jony, Maruf Ahmed Bhuiyan, Sharmin Sultana, Awlad Hossain, Laxman Karmakar, Taslima Akter, Sabeena Shahnaz, Ahmed Nawsher Alam & Tahmina Shirin

Institute of Epidemiology, Disease Control and Research; Holy Family Red Crescent Medical College Hospital

Sample details

Collection date
2025-11-15
Sampling location
Bangladesh (Dhaka, Dhaka)

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
Asian

INSDC

BioProject accession
BioSample accession

Host

Host
Host age
70
Host gender
Male
Host origin country
Bangladesh
Host health outcome
Recovered

Sequencing

Sequencing instrument
MinION
Sequencing library selection
PCR
Sequencing library source
VIRAL RNA
Consensus sequence software name
minimap2

Diagnostics

Diagnostic measurement - method
RT-PCR

Submission details

Submission ID
IEDCR-HFMCH2501
Submitting group
Date submitted
2026-10-20 16:00:56 UTC
Date released
2026-10-20 16:01:33 UTC
Earliest release date
2026-10-19

Files

Annotations

Alignment and QC

Length
10595 (83.7%)
# of SNPs
159
# of unknown bases
1546

Nucleotide mutations

Mutations called relative to the NC_035889.1 reference

Substitutions
  • T227C
  • A254G
  • A272G
  • G278A
  • A429G
  • T434C
  • C449T
  • T506C
  • C518T
  • A523G
  • T558C
  • T578C
  • T593C
  • C665T
  • T731A
  • A803G
  • A815G
  • G1004A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_035889.1 reference

Substitutions

E

  • E:A280T

NS1

  • NS1:E146K
  • NS1:T230A
  • NS1:A233T
  • NS1:V349M

NS2A

  • NS2A:A58T
  • NS2A:V143A
  • NS2A:A156T

NS2B

  • NS2B:M28I
  • NS2B:I112V

NS3

  • NS3:H584Y

NS5

  • NS5:V114M
  • NS5:V267A
  • NS5:K580R

ancC

  • ancC:T108A

pr

  • pr:N17S

prM

  • prM:N17S
Deletions
N/A
Insertions
N/A

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