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PP_0081VHU.2
Version 2
PP_0081VHU.1
Previous version
PP_0081VHU.2
Latest version
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Download metadata TSV
Bangladesh/IEDCR-ARBV2501066/2025-12-01
Md. Abdullah Omar Nasif,
Manjur Hossain Khan Jony,
Maruf Ahmed Bhuiyan,
Sharmin Sultana,
Mohammad Rashedul Hassan,
Awlad Hossen,
Laxman Karmakar,
Ahmed Nawsher Alam &
Tahmina Shirin
Institute of Epidemiology, Disease Control and Research
Sample details
Collection date
2025-12-01
Sampling location
Bangladesh (Dhaka)
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
II-ECSA
INSDC
BioProject accession
PRJEB128676
BioSample accession
SAMEA124247751
Sampling
Anatomical material
Serum
Host
Host
human (Homo sapiens)
Host age
54
Host gender
Male
Sequencing
Amplicon PCR primer scheme
artic-chikv-ecsa / 400 / v1.0.0
Sequencing instrument
MinION
Submission details
Submission ID
IEDCR-ARBV2501066
Submitting group
IEDCR_Virology
Date submitted
2026-10-20 15:58:35 UTC
Date released
2026-10-20 16:00:14 UTC
Earliest release date
2026-10-19
Files
Annotations
PP_0081VHU.2.embl
Alignment and QC
Length
11203 (94.7%)
# of SNPs
367
# of inserted bases
1
# of deleted bases
3
# of unknown bases
1
# of frame shifts
3
Frame shifts
nsP1:514-535(nt:1616-1681),nsP3:308-530(nt:4995-5665),nsP4:539-612(nt:7279-7501)
Nucleotide mutations
Mutations called relative to the
NC_004162.2
reference
Substitutions
G
113
A
T
163
A
T
244
C
T
268
C
T
271
C
T
319
C
A
337
G
C
358
T
C
409
T
C
448
A
C
459
A
T
490
C
A
493
C
G
520
T
A
575
G
T
590
G
T
610
C
T
670
C
Show more
Deletions
4994, 7277, 7278
Insertions
ins_1615:A
Amino acid substitutions
Substitutions called relative to the
NC_004162.2
reference
Substitutions
6K
6K:
V
8
I
6K:
I
54
V
C
C:
P
23
S
C:
V
27
I
C:
K
63
R
E1
E1:
I
55
V
E1:
A
98
T
E1:
K
211
E
E1:
D
284
E
E1:
V
322
A
E2
E2:
G
57
K
E2:
I
74
M
E2:
G
79
E
E2:
N
160
T
E2:
A
164
T
E2:
L
181
M
E2:
S
194
G
E2:
I
211
T
E2:
V
264
A
E2:
M
267
R
E2:
S
299
N
E2:
T
312
M
E2:
A
344
T
E2:
S
375
T
E2:
V
386
A
E2:
M
390
I
E2:
I
415
V
E2:
I
418
V
E3
E3:
A
3
V
E3:
I
23
T
E3:
E
33
K
nsP1
nsP1:
A
13
T
nsP1:
T
128
K
nsP1:
I
167
V
nsP1:
L
172
V
nsP1:
E
234
K
nsP1:
M
383
L
nsP1:
I
384
L
nsP1:
T
481
I
nsP1:
Q
488
R
nsP1:
L
507
R
nsP2
nsP2:
S
54
N
nsP2:
H
374
Y
nsP2:
C
642
Y
nsP2:
S
643
N
nsP2:
A
793
V
nsP3
nsP3:
I
171
V
nsP3:
V
175
I
nsP3:
Y
217
H
nsP4
nsP4:
V
21
A
nsP4:
T
75
A
nsP4:
T
101
I
nsP4:
T
254
A
nsP4:
Q
500
L
nsP4:
I
514
T
Deletions
nsP3
nsP3:307
nsP4
nsP4:538
Insertions
N/A
Nucleotide sequence
Reference-aligned nucleotide sequence
Reference-aligned amino acid sequences
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