Pathoplexus
Organisms
Measles Virus
SeqSets
News
About
Docs
Login
Pathoplexus
Organisms
Andes Virus [Hantavirus]
Crimean-Congo Hemorrhagic Fever Virus
Dengue Virus
Ebola Bundibugyo
Ebola Sudan
Ebola Zaire
HMPV
Marburg Virus
Measles Virus
Mpox Virus
RSV-A
RSV-B
West Nile Virus
Yellow Fever Virus
SeqSets
News
About
Docs
Login
API docs
Governance
Legal notice
Funding
Contact
Status
Measles Virus
|
Browse data
Submit sequences
Resources
Select organism section
Browse data
Submit sequences
Resources
PP_0073DGA.2
Version 2
PP_0073DGA.1
Previous version
PP_0073DGA.2
Latest version
Compare versions
Download
Download FASTA
Download metadata TSV
Bangladesh/PP_0073DGA.2/2026-04-23
Shaheen Alam,
Kinkar Ghosh,
Yeasir Karim,
Muhammad Talha,
Rubel Howladar,
Asif Haque,
Mirza Md Ziaul Islam,
Md Reaz Mobarak,
Md Mahbubul Hoque,
Kamrun Nahar,
Mst Noorjahan Begum &
Mustafizur Rahman
Virology Laboratory, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b)
Sample details
Collection date
2026-04-23
Sampling location
Bangladesh (Parbotesorpur, Gurudaspur, Natrore, Natore)
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Genotype
Genotype
B3
INSDC
INSDC accession
OZ484464.1
BioProject accession
PRJEB114932
BioSample accession
SAMEA122892262
GCA accession
GCA_985568235.1
Sampling
Collection method
Nasopharyngeal (NP) and oropharyngeal (OP) swabs
Host
Host
human (Homo sapiens)
Sequencing
Sequencing date
2026-06-09
Sequencing instrument
Oxford Nanopore MinION Mk1D
Sequencing protocol
https://dx.doi.org/10.17504/protocols.io.rm7vz63wxgx1/v2
Reference genome accession
AF266287
Submission details
Submission ID
B3/Bangladesh/12613047/2026
Submitting group
Virology,icddr,b
Date submitted
2026-06-14 07:06:55 UTC
Date released
2026-06-14 07:07:08 UTC
Earliest release date
2026-06-14
Alignment and QC
Length
15894 (95.7%)
# of SNPs
773
# of unknown bases
677
Nucleotide mutations
Mutations called relative to the
NC_001498.1
reference
Substitutions
A
50
G
T
73
C
A
92
G
T
100
C
G
122
A
A
197
C
T
224
C
T
248
C
A
260
C
T
356
C
C
383
T
C
404
A
A
413
G
T
422
C
T
443
A
A
461
G
C
470
T
C
473
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_001498.1
reference
Substitutions
C
C:
R
13
K
C:
Q
27
K
C:
Q
33
L
C:
R
38
T
C:
T
39
S
C:
E
40
D
C:
K
78
R
C:
S
88
P
C:
M
129
K
C:
G
171
E
F
F:
V
7
I
F:
I
10
V
F:
T
22
A
F:
A
105
V
F:
Q
139
R
F:
S
362
Y
F:
H
419
R
F:
A
512
T
H
H:
H
17
Y
H:
L
172
Q
H:
A
174
T
H:
A
176
T
H:
N
178
T
H:
S
211
G
H:
V
220
I
H:
M
227
V
H:
G
235
E
H:
S
240
N
H:
H
252
Y
H:
D
283
G
H:
F
284
L
H:
S
285
G
H:
F
296
L
H:
A
298
V
H:
R
302
G
H:
E
303
D
Show more
L
L:
V
34
L
L:
R
77
K
L:
A
81
T
L:
E
98
R
L:
T
131
I
L:
I
149
V
L:
I
150
T
L:
K
215
R
L:
A
252
T
L:
A
271
T
L:
K
441
R
L:
V
596
I
L:
S
616
N
L:
P
617
S
L:
R
623
K
L:
K
626
R
L:
E
628
A
L:
V
632
I
Show more
M
M:
K
204
R
M:
R
225
K
N
N:
S
144
F
N:
N
427
S
N:
G
431
R
N:
G
443
N
N:
G
445
E
N:
Y
451
H
N:
G
455
E
N:
S
456
P
N:
A
462
V
N:
S
470
G
N:
M
471
T
N:
S
481
F
N:
G
482
S
N:
L
505
S
N:
G
509
D
P
P:
S
26
P
P:
V
29
I
P:
A
34
E
P:
Q
45
H
P:
D
46
E
P:
A
48
S
P:
E
52
K
P:
E
54
K
P:
G
74
S
P:
A
90
S
P:
I
95
A
P:
R
98
G
P:
T
105
A
P:
C
109
R
P:
H
111
Y
P:
V
120
I
P:
D
136
E
P:
D
146
N
Show more
V
V:
S
26
P
V:
V
29
I
V:
A
34
E
V:
Q
45
H
V:
D
46
E
V:
A
48
S
V:
E
52
K
V:
E
54
K
V:
G
74
S
V:
A
90
S
V:
I
95
A
V:
R
98
G
V:
T
105
A
V:
C
109
R
V:
H
111
Y
V:
V
120
I
V:
D
136
E
V:
D
146
N
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue