PP_0073DEE.1

Bangladesh/PP_0073DEE.1/2026-04-22
Shaheen Alam, Kinkar Ghosh, Yeasir Karim, Muhammad Talha, Rubel Howladar, Asif Haque, Mirza Md Ziaul Islam, Md Reaz Mobarak, Md Mahbubul Hoque, Kamrun Nahar, Mst Noorjahan Begum & Mustafizur Rahman

Sample details

Collection date
2026-04-22
Sampling location
Bangladesh (Barodurgapur, Amirpur, Pabna Sadar)

Data use terms

Data use terms
OPEN
Data use terms URL

Genotype

Genotype
B3

Sampling

Collection method
Nasopharyngeal (NP) and oropharyngeal (OP) swabs

Host

Host

Sequencing

Sequencing date
2026-06-09
Sequencing instrument
Oxford Nanopore MinION Mk1D
Sequencing protocol
https://dx.doi.org/10.17504/protocols.io.rm7vz63wxgx1/v2
Reference genome accession
AF266287

Submission details

Submission ID
B3/Bangladesh/12612864/2026
Submitting group
Date submitted
2026-06-14 06:17:03 UTC
Date released
2026-06-14 06:17:26 UTC
Earliest release date
2026-06-14

Alignment and QC

Length
15893 (96.6%)
# of SNPs
796
# of unknown bases
536

Nucleotide mutations

Mutations called relative to the NC_001498.1 reference

Substitutions
  • A50G
  • T73C
  • A92G
  • T100C
  • G122A
  • A197C
  • T224C
  • T248C
  • A260C
  • T356C
  • C383T
  • C404A
  • A413G
  • T422C
  • T443A
  • A461G
  • C470T
  • C473T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001498.1 reference

Substitutions

C

  • C:R13K
  • C:Q27K
  • C:Q33L
  • C:R38T
  • C:T39S
  • C:E40D
  • C:K78R
  • C:S88P
  • C:M129K
  • C:G171E

F

  • F:V7I
  • F:I10V
  • F:T22A
  • F:A105V
  • F:Q139R
  • F:H419R
  • F:A512T

H

  • H:H17Y
  • H:L172Q
  • H:A174T
  • H:A176T
  • H:N178T
  • H:S211G
  • H:V220I
  • H:G235E
  • H:S240N
  • H:H252Y
  • H:D283G
  • H:F284L
  • H:S285G
  • H:F296L
  • H:R302G
  • H:E303D
  • H:T307I
  • H:R334Q

L

  • L:V34L
  • L:R77K
  • L:A81T
  • L:E98R
  • L:T131I
  • L:I149V
  • L:I150T
  • L:K215R
  • L:A252T
  • L:A271T
  • L:K441R
  • L:R447K
  • L:V596I
  • L:S616N
  • L:P617S
  • L:R623K
  • L:K626R
  • L:E628A

M

  • M:K204R

N

  • N:S144F
  • N:N427S
  • N:G431R
  • N:G443N
  • N:G445E
  • N:Y451H
  • N:G455E
  • N:S456P
  • N:A462V
  • N:S470G
  • N:M471T
  • N:S481F
  • N:G482S
  • N:L505S
  • N:G509D

P

  • P:S26P
  • P:V29I
  • P:A34E
  • P:Q45H
  • P:D46E
  • P:A48S
  • P:E52K
  • P:E54K
  • P:G74S
  • P:A90S
  • P:I95A
  • P:R98G
  • P:T105A
  • P:C109R
  • P:H111Y
  • P:V120I
  • P:D136E
  • P:D146N

V

  • V:S26P
  • V:V29I
  • V:A34E
  • V:Q45H
  • V:D46E
  • V:A48S
  • V:E52K
  • V:E54K
  • V:G74S
  • V:A90S
  • V:I95A
  • V:R98G
  • V:T105A
  • V:C109R
  • V:H111Y
  • V:V120I
  • V:D136E
  • V:D146N
Deletions
N/A
Insertions
N/A

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