PP_00731P7.3

Ethiopia/PX890986/2025-11-19
Feyssa Mekdes, Tollera Getachew, Abdella Saro, Bashea Chala, Zerihun Betselot, Getu Melak, Gebremicael Gebremedhin, Kidane Eleni, Weldemariam Atsbeha, Tasew Geremew, Abubeker Rajiha, Niazy Maysa, Leta Gemechu, Ali Abraham & Wolday Dawit

Ethiopian Public Health Institute, Addis Ababa, Ethiopia, Department of Biochemistry and Biomedical Sciences, Michael G. DeGroote Institute for Infectious Diseases Research, Health Sciences, Hamilton, Ontario, Canada

Sample details

Collection date
2025-11-19
Sampling location
Ethiopia (Jinka, Ari Zone)

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
MARV.A.1

INSDC

BioProject accession
BioSample accession

Submission details

Submission ID
PX890986
Submitting group
Date submitted
2026-10-02 15:49:28 UTC
Date released
2026-10-02 15:58:35 UTC
Earliest release date
2026-06-17

Files

Annotations

Alignment and QC

Length
18650 (94%)
# of SNPs
995
# of ambiguous bases
4
# of unknown bases
690

Nucleotide mutations

Mutations called relative to the NC_001608.3 reference

Substitutions
  • T157C
  • A169G
  • G214A
  • C256T
  • A262G
  • G289A
  • T304C
  • G310A
  • G337A
  • G340A
  • A346G
  • A364G
  • C433T
  • C443T
  • A445G
  • A502G
  • C511T
  • C520T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001608.3 reference

Substitutions

GP

  • GP:F6L
  • GP:L7F
  • GP:T16I
  • GP:N18T
  • GP:K158R
  • GP:S201N
  • GP:Q205K
  • GP:K222N
  • GP:P233S
  • GP:L244P
  • GP:D250N
  • GP:K253T
  • GP:S260N
  • GP:A267I
  • GP:A284T
  • GP:S291P
  • GP:P295L
  • GP:G308E

L

  • L:A115V
  • L:S128P
  • L:V189I
  • L:I214V
  • L:H335C
  • L:D336S
  • L:L341F
  • L:D345G
  • L:T399V
  • L:E536D
  • L:N761D
  • L:N887S
  • L:S957A
  • L:K981R
  • L:E1143K
  • L:D1162E
  • L:K1164E
  • L:E1180G

NP

  • NP:V334I
  • NP:R407Q
  • NP:M428I
  • NP:D440N
  • NP:G481S
  • NP:A577V
  • NP:N578S
  • NP:P579S
  • NP:M612A
  • NP:D625Y
  • NP:N654S

VP24

  • VP24:N17K
  • VP24:K237R

VP30

  • VP30:Y34H
  • VP30:S63P
  • VP30:A88T
  • VP30:P125L
  • VP30:S159N
  • VP30:M201I
  • VP30:G278S

VP35

  • VP35:I62V
  • VP35:R70K
  • VP35:S91N
  • VP35:A184E
  • VP35:S193A

VP40

  • VP40:V57I
  • VP40:V303I
Deletions
N/A
Insertions
N/A

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