PP_0072ZR7.4

Ethiopia/PP_0072ZR7/2025-11-17
Mekdes Feyssa, Getachew Tollera, Saro Abdella, Chala Bashea, Betselot Zerihun, Melak Getu, Gebremedhin Gebremicael, Eleni Kidane, Atsbeha Weldemariam, Geremew Tasew, Rajiha Abubeker, Maysa Niazy, Gemechu Leta, Abraham Ali & Dawit Wolday

Ethiopian Public Health Institute, Addis Ababa, Ethiopia; Department of Biochemistry and Biomedical Sciences, Michael G. DeGroote Institute for Infectious Diseases Research, Health Sciences, McMaster University, Hamilton, Ontario, Canada

Sample details

Collection date
2025-11-17
Sampling location
Ethiopia (Jinka, Ari Zone)
Isolate name
Ethiopia/PP_0072ZR7/2025-11-17

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
MARV.A.1

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Submission details

Submission ID
PX890987
Submitting group
Date submitted
2026-10-19 13:23:17 UTC
Date released
2026-10-19 13:27:02 UTC
Earliest release date
2026-06-17

Files

Annotations

Alignment and QC

Length
19031 (99.1%)
# of SNPs
1135
# of inserted bases
2
# of ambiguous bases
1
# of unknown bases
92

Nucleotide mutations

Mutations called relative to the NC_001608.3 reference

Substitutions
  • G101A
  • C115T
  • T118C
  • G124A
  • T157C
  • A169G
  • G214A
  • C256T
  • A262G
  • G289A
  • T304C
  • G310A
  • G337A
  • G340A
  • A346G
  • A364G
  • C433T
  • C443T
Deletions
N/A
Insertions
ins_18681:G, ins_18877:A

Amino acid substitutions

Substitutions called relative to the NC_001608.3 reference

Substitutions

GP

  • GP:F6L
  • GP:L7F
  • GP:T16I
  • GP:N18T
  • GP:K158R
  • GP:S201N
  • GP:Q205K
  • GP:K222N
  • GP:P233S
  • GP:L244P
  • GP:D250N
  • GP:K253T
  • GP:S260N
  • GP:A267I
  • GP:R276Q
  • GP:P278S
  • GP:H279Y
  • GP:A284T

L

  • L:A115V
  • L:S128P
  • L:V189I
  • L:I214V
  • L:H335C
  • L:D336S
  • L:L341F
  • L:D345G
  • L:T399V
  • L:E536D
  • L:N761D
  • L:N887S
  • L:S957A
  • L:K981R
  • L:E1143K
  • L:D1162E
  • L:K1164E
  • L:E1180G

NP

  • NP:V334I
  • NP:R407Q
  • NP:M428I
  • NP:D440N
  • NP:G481S
  • NP:A577V
  • NP:N578S
  • NP:P579S
  • NP:M612A
  • NP:D625Y
  • NP:N654S

VP24

  • VP24:N17K
  • VP24:K237R

VP30

  • VP30:V15A
  • VP30:P17S
  • VP30:T18S
  • VP30:Y34H
  • VP30:S63P
  • VP30:A88T
  • VP30:P125L
  • VP30:S159N
  • VP30:M201I
  • VP30:G278S

VP35

  • VP35:I62V
  • VP35:R70K
  • VP35:S91N
  • VP35:A184E
  • VP35:S193A

VP40

  • VP40:V57I
  • VP40:V303I
Deletions
N/A
Insertions
N/A

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