PP_006W0PN.2

Argentina/PP_006W0PN.2/1999
D. Alonso, C. Bellomo, U. Perez-Sautu, K. Prieto, S. Kehl, R. Coelho, N. Periolo, M. Sanchez Lockhart, G. Palacios & V. Martinez

Malbran Institute, Virology

Sample details

Collection date
1999
Sampling location
Argentina (San Martin de los Andes, Neuquen)
City
San Martin de los Andes
Site
San Martin de los Andes
Isolate name
Andes/ARG-O.l.444

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

INSDC accession M
INSDC accession S
NCBI release date
2023-10-10

Host

Host
Host origin country
Argentina

Sequencing

Sequencing instrument
illumina
Depth of coverage
97

Submission details

Submission ID
OP555724.1.M/OP555723.1.S
Version comment
https://github.com/pathoplexus/curation_reports/issues/25
Submitting group
Date submitted
2026-05-23 00:48:21 UTC
Date released
2026-06-25 14:23:19 UTC
Earliest release date
2023-10-10

Alignment and QC

Length S
1845 (98.3%)
# of SNPs S
118
# of inserted bases S
8
# of deleted bases S
2
Length M
3555 (95.2%)
# of SNPs M
187
# of unknown bases M
62

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

M

  • T74C
  • G114A
  • C147T
  • C174T
  • C190T
  • A192G
  • C231T
  • C243T
  • A264G
  • C285T
  • C315T
  • G339A
  • T345C
  • A360G
  • T363C
  • A381G
  • T387C
  • A391G

S

  • A57G
  • G63A
  • G66A
  • G120A
  • A135G
  • T202C
  • A219G
  • T225C
  • T244C
  • T306C
  • A312G
  • G315A
  • A318G
  • T357C
  • T367C
  • G378A
  • C444A
  • G450A
Deletions

S

1443, 1573
Insertions

S

ins_1486:TT, ins_1555:A, ins_1631:TTT, ins_1663:T, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

GPC

  • GPC:V8A
  • GPC:I114V
  • GPC:H294Y
  • GPC:V346I
  • GPC:T353V
  • GPC:I537V
  • GPC:T1023A
  • GPC:S1055A
  • GPC:V1127I

Gc

  • Gc:T372A
  • Gc:S404A
  • Gc:V476I

Gn

  • Gn:V8A
  • Gn:I114V
  • Gn:H294Y
  • Gn:V346I
  • Gn:T353V
  • Gn:I537V

NSs

  • NSs:Q5R
  • NSs:E33G
  • NSs:L35S
  • NSs:I62T
Deletions
N/A
Insertions
N/A

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