PP_006W08K.2

Version 2

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Argentina/PP_006W08K.2/2014-06-01

D. O. Alonso, U. Perez-Sautu, C. M. Bellomo, K. Prieto, A. Iglesias, R. Coelho, N. Periolo, I. Domenech, G. Talmon, R. Hansen, G. Palacios & V. P. Martinez

INEI - ANLIS Dr C G Malbran, Virologia

Sample details

Collection date

2014-06-01

Sampling location

Argentina (Rio Negro)

Isolate name

AREB14/P2

Data use terms

Changed	User	Data use terms
2026-05-09 17:55	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

INSDC

INSDC accession L

MN850094.1

INSDC accession M

MN850089.1

INSDC accession S

MN850084.1

NCBI release date

2020-03-31

Host

human (Homo sapiens)

Host age

Host age bin

70 - 79

Host gender

Male

Host origin country

Argentina

Host disease

Hantavirus Pulmonary Syndrome

Host health outcome

Died

Sequencing

Sequencing instrument

illumina

Sequencing protocol

For whole-genome sequencing, we extracted RNA from peripheral blood of patients and prepared sequencing libraries by using target-enrichment technology and ANDV-specific probes.

Submission details

Submission ID

MN850094.1.L/MN850089.1.M/MN850084.1.S

Version comment

https://github.com/artic-network/artic-andv/blob/main/andv-metadata.csv

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-05-25 05:01:48 UTC

Date released

2026-06-25 14:23:19 UTC

Earliest release date

2020-03-31

Alignment and QC

Length L

6562 (100%)

# of SNPs L

386

Length M

3679 (100%)

# of SNPs M

211

# of inserted bases M

Length S

1876 (100%)

# of SNPs S

118

# of inserted bases S

# of deleted bases S

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

T47C
G53A
C74T
C131T
C146T
G149A
C155T
T182C
A200G
A218G
T269C
A296G
T297C
A302G
C305T
T326C
T338C
A341C

M

G45A
T48C
T74C
G114A
C159A
C174T
C190T
A192G
C231T
C243T
A264G
T324C
G339A
T345C
A360G
T363C
T387C
C394T

S

G63A
G66A
G120A
A135G
C172T
A219G
T225C
A240G
T244C
A261G
T306C
A312G
G315A
A318G
T357C
T366C
C417T
C444A

Deletions

S

1443, 1573

Insertions

M

ins_3504:ATATACAT

S

ins_1482:CC, ins_1555:G, ins_1631:TTT, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references