PP_006UYDF.2

Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.

Portugal/PP_006UYDF.2/2025-10-17

Rafael Gutiérrez-López, Fátima Amaro, Vítor Borges, Maria Paz Sánchez-Seco, Hugo Costa Osório, Hélder Cortes, Daniel Sobral, João Paulo Gomes, Ana Vázquez & Líbia Zé-Zé

Centre for Vectors and Infectious Diseases Research (CEVDI), National Institute of Health Doutor Ricardo Jorge (INSA), Águas de Moura, Portugal; National Center for Microbiology, Health Institute Carlos III, Majadahonda, Madrid, Spain

Sample details

Collection date

2025-10-17

Sampling location

Portugal

Isolate name

PTCulexWNV_SM40_INSA2025

Data use terms

Changed	User	Data use terms
2026-04-27 16:18	daniel.sobral	RESTRICTED until 2027-04-27

RESTRICTED

Data use terms URL

https://pathoplexus.org/about/terms-of-use/restricted-data

Lineage

INSDC

BioProject accession

PRJEB87871

BioSample accession

SAMEA122237257

Raw reads accession

ERR17072042

Host

mosquitos (Culex univittatus)

Sequencing

Sequencing date

2026-01-27

Sequencing instrument

Illumina MiSeq

Sequencing protocol

lllumina Viral Surveillance Panel v2 Kit

Submission details

Submission ID

PTCulexWNV/SM40/INSA2025

Submitting group

Genomics and Bioinformatics Unit @ INSA, Portugal

Date submitted

2026-04-27 21:28:46 UTC

Date released

2026-04-27 21:29:27 UTC

Earliest release date

2026-04-27

Alignment and QC

Length

10976 (99.5%)

# of SNPs

484

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

T195A
T234C
C282T
C340T
G354A
C422T
G447T
A448G
G492A
G495T
C561T
C600T
T606C
T615C
A630G
T639C
G786A
T826C

Deletions

N/A

Insertions

N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference