PP_006UY9P.2

Portugal/PP_006UY9P.2/2025-10-30
Rafael Gutiérrez-López, Fátima Amaro, Vítor Borges, Maria Paz Sánchez-Seco, Hugo Costa Osório, Hélder Cortes, Daniel Sobral, João Paulo Gomes, Ana Vázquez & Líbia Zé-Zé

Centre for Vectors and Infectious Diseases Research (CEVDI), National Institute of Health Doutor Ricardo Jorge (INSA), Águas de Moura, Portugal; National Center for Microbiology, Health Institute Carlos III, Majadahonda, Madrid, Spain

Sample details

Collection date
2025-10-30
Sampling location
Portugal
Isolate name
PTCulexWNV_AS46_INSA2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-04 10:37daniel.sobralOPEN
2026-04-27 16:18daniel.sobralRESTRICTED until 2027-04-27
Data use terms URL

Lineage

Lineage
1A

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession
Raw reads accession

Host

Host

Sequencing

Sequencing date
2026-01-27
Sequencing instrument
Illumina MiSeq
Sequencing protocol
lllumina Viral Surveillance Panel v2 Kit

Submission details

Submission ID
PTCulexWNV/AS46/INSA2025
Submitting group
Date submitted
2026-04-27 21:28:46 UTC
Date released
2026-04-27 21:29:27 UTC
Earliest release date
2026-04-27

Alignment and QC

Length
10975 (99.5%)
# of SNPs
462

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C93T
  • T195A
  • T234C
  • C282T
  • A321G
  • C340T
  • G354A
  • G447T
  • C483T
  • G492A
  • G495T
  • C561T
  • C600T
  • T606C
  • T615C
  • A630G
  • T639C
  • T642C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:A70S
  • NS1:M167V

NS2A

  • NS2A:L158M

NS2B

  • NS2B:V103A

NS3

  • NS3:I175V
  • NS3:P249T
  • NS3:I506V

NS4A

  • NS4A:A85V

NS4B

  • NS4B:E249D

NS5

  • NS5:K280R

env

  • env:R93K
  • env:I126T
  • env:V159I
  • env:L167F
Deletions
N/A
Insertions
N/A

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