PP_004JCEM.1

Display Name: USA/PP_004JCEM.1/2026-01-01
R. Sainsbury

Sample details

Collection date
2026-01-01
Country
USA
Admin level 1
South Carolina
Isolate name
MVs/South Carolina.USA/1.26/29 [D8]

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-04 03:33insdc_ingest_userOPEN
Data use terms URL

Genotype

Genotype
D8

Authors

Author affiliations
State of Utah, Unified Public Health Laboratory, Department of Health and Human Services

INSDC

INSDC accession
NCBI release date
2026-02-03
NCBI update date
2026-02-03

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15769
Completeness
95.82%
# of SNPs
489
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
1
# of unknown bases
538
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX932160.1
Submitting group
Date submitted
2026-02-04 03:33:15 UTC
Date released
2026-02-04 03:43:00 UTC
Earliest release date
2026-02-03

Nucleotide mutations

Mutations called relative to the NC_001498.1 reference

Substitutions

  • G97A
  • G122A
  • T224C
  • A257G
  • G269A
  • G293A
  • G305A
  • C341T
  • A344G
  • G353A
  • G368A
  • A413G
  • T422C
  • T449C
  • C518T
  • C538T
  • T572C
  • C596T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001498.1 reference

    Substitutions

    C

  • C:D5G
  • C:K78R
  • C:G181V

    • F

  • F:V5A
  • F:A9V
  • F:F11V
  • F:S276A
  • F:H419R

    • H

  • H:R175K
  • H:G235E
  • H:G243E
  • H:A267I
  • H:R334Q
  • H:N390I
  • H:A400T
  • H:V412L
  • H:N416D
  • H:T446S
  • H:V451M
  • H:K575Q
  • H:V608A

    • L

  • L:P43S
  • L:A81T
  • L:R142K
  • L:A252T
  • L:P275S
  • L:F321C
  • L:E329D
  • L:L610S
  • L:Y613H
  • L:R623K
  • L:E628K
  • L:V632I
  • L:N641D
  • L:I650M
  • L:T652A
  • L:D1037G
  • L:R1044G
  • L:V1343I

    • N

  • N:S144F
  • N:K214Q
  • N:I406T
  • N:K441R
  • N:G443S
  • N:E446G
  • N:Y451N
  • N:S457I
  • N:A459L
  • N:P467L
  • N:M471T
  • N:R497K
  • N:G509S

    • P

  • P:E54K
  • P:T92A
  • P:K195R
  • P:S219G
  • P:A269V
  • P:G270E
  • P:I282T
  • P:K350R
  • P:R355K
  • P:V414A
  • P:V446M
  • P:A459V

    • V

  • V:E54K
  • V:T92A
  • V:K195R
  • V:S219G
  • V:G237S
    • Deletions
    None
    Insertions
    None

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