PP_0047KSC.2

Cote_d'Ivoire/PP_0047KSC.2/2017-10-15
Xiaomin Dong, Steven Edwards, Yi Mo Deng, Ian Barr, Arada Hirankitti & Clyde Dapat

WHO Collaborating Centre for Reference and Research on Influenza

Sample details

Collection date
2017-10-15
Sampling location
Cote d'Ivoire (Lagunes)
GISAID Isolate ID
EPI_ISL_2543855

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
B.D.4

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Sampling

Sample type
Nasopharyngeal

Host

Host gender
Female

Submission details

Submission ID
hRSV/B/Cote_d'Ivoire/IPCI-036/2017
Submitting group
Date submitted
2025-10-02 16:45:10 UTC
Date released
2025-10-03 10:38:34 UTC
Earliest release date
2025-09-24

Alignment and QC

Length
15219 (99.9%)
# of SNPs
168
# of inserted bases
11
# of deleted bases
2

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • G27A
  • C263T
  • G458A
  • G513T
  • G579A
  • C829T
  • C994T
  • C1001T
  • T1180C
  • G1385A
  • A1447T
  • T1621C
  • C1804T
  • A1819G
  • T1846C
  • C1957T
  • C2125T
  • C2167T
Deletions
973, 4586
Insertions
ins_15222:TAATGTCTCGT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:M115V
  • F:L173S
  • F:R191K
  • F:N201S
  • F:M206I
  • F:R209K
  • F:P312H

G

  • G:N4T
  • G:A74V
  • G:A107T
  • G:T130I
  • G:T131A
  • G:T136R
  • G:I137T
  • G:P205S
  • G:I252T
  • G:K276N
  • G:I288T
  • G:E303K
  • G:P304S
  • G:I310N

L

  • L:N180K
  • L:V715I
  • L:P1032S
  • L:A1479V
  • L:A1712T
  • L:V1716I
  • L:P1729S
  • L:D1985N
  • L:T1987I

M2-1

  • M2-1:S142N
  • M2-1:S182N

M2-2

  • M2-2:I2T
  • M2-2:D81N

N

  • N:V97I

SH

  • SH:I36V
  • SH:D64N
Deletions
N/A
Insertions
N/A

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