PP_0047J4Q.2

Display Name: Cote_d'Ivoire/PP_0047J4Q.2/2017-04-21
Xiaomin Dong, Steven Edwards, Yi Mo Deng, Ian Barr, Arada Hirankitti & Clyde Dapat

Sample details

Collection date
2017-04-21
Country
Cote d'Ivoire
Admin level 1
Lagunes
GISAID Isolate ID
EPI_ISL_2543854

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-24 06:54clydeOPEN
Data use terms URL

Lineage

Lineage
B.D.4

Authors

Author affiliations
WHO Collaborating Centre for Reference and Research on Influenza

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Sampling

Sample type
Nasopharyngeal

Host

Host name - common
Human
Host gender
Female

Alignment and QC metrics

Length
15202
Completeness
99.87%
# of SNPs
155
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
hRSV/B/Cote_d'Ivoire/IPCI-003-2176/2017
Submitting group
Date submitted
2025-10-02 16:45:10 UTC
Date released
2025-10-03 10:38:34 UTC
Earliest release date
2025-09-24

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G27A
  • C263T
  • G513T
  • G579A
  • C829T
  • C994T
  • C1001T
  • T1180C
  • G1385A
  • G1531A
  • T1621C
  • C1804T
  • A1819G
  • T1846C
  • C2125T
  • C2167T
  • C2198T
  • A2286G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:M115V
  • F:L173S
  • F:R191K
  • F:N201S
  • F:M206I
  • F:R209K
  • F:P312H

    • G

  • G:N4T
  • G:A74V
  • G:A107T
  • G:T131A
  • G:T136R
  • G:I137T
  • G:N144S
  • G:I252T
  • G:I288T
  • G:E303K
  • G:P304S
  • G:I310N

    • L

  • L:V715I
  • L:T973M
  • L:A1479V
  • L:A1712T
  • L:V1716I
  • L:P1729S
  • L:D1985N
  • L:T1987I
  • L:G2066R

    • M2-1

  • M2-1:S142N
  • M2-1:S182N

    • M2-2

  • M2-2:I2T

    • N

  • N:V97I

    • SH

  • SH:D64N
    • Deletions
    None
    Insertions
    None

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