PP_0047ECC.2

Australia/PP_0047ECC.2/2023-06-05
Xiaomin Dong, Steven Edwards, Yi Mo Deng, Ian Barr, Arada Hirankitti & Clyde Dapat

WHO Collaborating Centre for Reference and Research on Influenza

Sample details

Collection date
2023-06-05
Sampling location
Australia (Victoria)
City
Melbourne
GISAID Isolate ID
EPI_ISL_19005652

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
B.D.E.7

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Sampling

Sample type
Other: Nasopharyngeal and Oropharyngeal swab

Submission details

Submission ID
hRSV/B/Australia/VIC-RCH0119/2023
Submitting group
Date submitted
2025-10-02 16:45:10 UTC
Date released
2025-10-03 10:38:34 UTC
Earliest release date
2025-09-24

Cited in

Alignment and QC

Length
15220 (99.9%)
# of SNPs
119
# of inserted bases
21
# of deleted bases
1

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • G1A
  • C3G
  • A131G
  • G513T
  • G547A
  • G579A
  • A590G
  • C666T
  • G1385A
  • A1462G
  • T1555C
  • G1732A
  • T1846C
  • T1882C
  • C2074T
  • C2198T
  • A2503G
  • C2554T
Deletions
973
Insertions
ins_0:TTGCACACTCGAAAAAA, ins_15092:ATAT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:V103A
  • F:S190N
  • F:N201S
  • F:S211N

G

  • G:A74V
  • G:R98K
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P150S
  • G:P214S
  • G:P221L
  • G:P229L
  • G:H257Y

L

  • L:K260R
  • L:I445V
  • L:K570R
  • L:K1704N
  • L:R1759K
  • L:I1834V
  • L:F1982L
  • L:T1987I

M

  • M:T89I

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:C49F

N

  • N:V97I

NS2

  • NS2:T3A
  • NS2:T28I

P

  • P:S67G
  • P:D229G
Deletions
N/A
Insertions
N/A

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