PP_00461CT.2

Australia/PP_00461CT.2/2024-01-30
Xiaomin Dong, Steven Edwards, Yi Mo Deng, Ian Barr, Arada Hirankitti & Clyde Dapat

WHO Collaborating Centre for Reference and Research on Influenza

Sample details

Collection date
2024-01-30
Sampling location
Australia (Northern Territory)
City
Darwin
GISAID Isolate ID
EPI_ISL_19561320

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
A.D.3.1

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Host

Host gender
Male

Submission details

Submission ID
hRSV/A/Australia/NT-RDH0050/2024
Submitting group
Date submitted
2025-10-02 15:57:19 UTC
Date released
2025-10-03 10:38:16 UTC
Earliest release date
2025-09-24

Cited in

Alignment and QC

Length
15216 (99.9%)
# of SNPs
226
# of inserted bases
5
# of deleted bases
3

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T66A
  • A67G
  • C90T
  • C183T
  • G192A
  • G587T
  • C665A
  • C691T
  • T844A
  • C871T
  • T988C
  • T989C
  • C1012T
  • G1034A
  • G1050A
  • G1077A
  • T1359C
  • G1368A
Deletions
3214, 4174, 4592
Insertions
ins_0:TTGC, ins_3154:A

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I
  • F:L20F
  • F:K68E
  • F:S276N

G

  • G:P71L
  • G:H90Y
  • G:L101S
  • G:L104M
  • G:G106R
  • G:T113I
  • G:V131D
  • G:I134K
  • G:R151H
  • G:N178G
  • G:G224E
  • G:V225A
  • G:P230T
  • G:S243I
  • G:S250F
  • G:H258Q
  • G:K262E
  • G:E263K

L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:H1434N
  • L:L1438Q
  • L:I1523V
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:N2035K
  • L:V2078I

M2-1

  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:I46L
  • M2-2:T77A

N

  • N:E122D
  • N:V352A

NS2

  • NS2:L23I

P

  • P:D47E
  • P:L55P
  • P:T92M
Deletions
N/A
Insertions
N/A

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