PP_00340U0.3

Display Name: Sierra_Leone/PP_00340U0.3/2025-07-15
Allan K. O. Campbell, Martin Faye, Mohamed Kane, Mignane Ndiaye, Ifeanyi Omah, Andy Mahine Diouf, Mamadaou Aliou Barry, Aboubacry Gaye, Moussa Moise Diagne, Aminata Koroma, Mohamed Boie, Zikan Koroma, Joseph Kanu, Boubacar Diallo, Abdurahmane Sow, Amadou Alpha Sall, Ibrahima Soce Fall, Doris Harding, James Squire, Mohamed Alex Vandi & Foday Sahr

Sample details

Collection date
2025-07-15
Country
Sierra Leone
Admin level 1
Koinadugu

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-17 21:05oakcampbell25@gmail.comOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
hMPXV-1
Lineage
G.1

Authors

Author affiliations
National Public Health Agency (NPHA) Sierra Leone, Central Public Health Reference Laboratory, Institute Pasteur de Dakar,University of Edinburg

INSDC

BioProject accession
BioSample accession

Alignment and QC metrics

Length
176732
Completeness
25.75%
# of SNPs
21
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
125948
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PL-25-07-082|Koinadugu|SLE|2025-07-15
Submitting group
Date submitted
2025-10-17 08:11:57 UTC
Date released
2025-10-17 08:42:57 UTC
Earliest release date
2025-08-17

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C13298T
  • G20913A
  • G21991A
  • G23118A
  • G28139A
  • T28175C
  • C30636T
  • G32868A
  • G77383A
  • G80099A
  • C85413T
  • C112470T
  • G149265A
  • C149365T
  • C152973T
  • G158424A
  • C161953T
  • T164382C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_063383.1 reference

    Substitutions

    OPG036

  • OPG036:S51F

    • OPG037

  • OPG037:S148L

    • OPG044

  • OPG044:D17N

    • OPG047

  • OPG047:D187N

    • OPG049

  • OPG049:S95L

    • OPG098

  • OPG098:E162K

    • OPG106

  • OPG106:R29K

    • OPG132

  • OPG132:M357I

    • OPG174

  • OPG174:G11R
  • OPG174:S44L

    • OPG188

  • OPG188:H120Y

    • OPG204

  • OPG204:E314K
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue