PP_00340U0.3

Sierra_Leone/PP_00340U0.3/2025-07-15
Allan K. O. Campbell, Martin Faye, Mohamed Kane, Mignane Ndiaye, Ifeanyi Omah, Andy Mahine Diouf, Mamadaou Aliou Barry, Aboubacry Gaye, Moussa Moise Diagne, Aminata Koroma, Mohamed Boie, Zikan Koroma, Joseph Kanu, Boubacar Diallo, Abdurahmane Sow, Amadou Alpha Sall, Ibrahima Soce Fall, Doris Harding, James Squire, Mohamed Alex Vandi & Foday Sahr

National Public Health Agency (NPHA) Sierra Leone, Central Public Health Reference Laboratory, Institute Pasteur de Dakar,University of Edinburg

Sample details

Collection date
2025-07-15
Sampling location
Sierra Leone (Koinadugu)

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-17 21:05oakcampbell25@gmail.comOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
G.1

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Submission details

Submission ID
PL-25-07-082|Koinadugu|SLE|2025-07-15
Submitting group
Date submitted
2025-10-17 08:11:57 UTC
Date released
2025-10-17 08:42:57 UTC
Earliest release date
2025-08-17

Alignment and QC

Length
176732 (25.8%)
# of SNPs
21
# of unknown bases
125948

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C13298T
  • G20913A
  • G21991A
  • G23118A
  • G28139A
  • T28175C
  • C30636T
  • G32868A
  • G77383A
  • G80099A
  • C85413T
  • C112470T
  • G149265A
  • C149365T
  • C152973T
  • G158424A
  • C161953T
  • T164382C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

OPG036

  • OPG036:S51F

OPG037

  • OPG037:S148L

OPG044

  • OPG044:D17N

OPG047

  • OPG047:D187N

OPG049

  • OPG049:S95L

OPG098

  • OPG098:E162K

OPG106

  • OPG106:R29K

OPG132

  • OPG132:M357I

OPG174

  • OPG174:G11R
  • OPG174:S44L

OPG188

  • OPG188:H120Y

OPG204

  • OPG204:E314K
Deletions
N/A
Insertions
N/A

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